PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02499g02007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 616aa    MW: 68113.6 Da    PI: 7.2252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02499g02007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.22.9e-32208264259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgy+WrKYGqK+vkgsefprsYY+Ct ++Cpvkkkvers  d++++ei+Y+g Hnh+
  Niben101Scf02499g02007.1 208 DDGYTWRKYGQKHVKGSEFPRSYYKCTRQNCPVKKKVERSP-DGQITEIVYKGAHNHH 264
                               8****************************************.***************8 PP
2WRKY66.83.4e-21415466159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++p       sagCpv+k+ver+ ++ k v++tYeg+Hnhe
  Niben101Scf02499g02007.1 415 LDDGYRWRKYGQKVVKGNPNP-------SAGCPVRKHVERAPDNLKSVITTYEGKHNHE 466
                               59*******************.......57****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27200265IPR003657WRKY domain
SuperFamilySSF1182904.84E-25205265IPR003657WRKY domain
SMARTSM007741.3E-35207265IPR003657WRKY domain
PfamPF031062.8E-25208264IPR003657WRKY domain
PROSITE profilePS5081122.699208266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-24400468IPR003657WRKY domain
SuperFamilySSF1182903.92E-19408468IPR003657WRKY domain
PROSITE profilePS5081127.967410468IPR003657WRKY domain
SMARTSM007742.7E-25415467IPR003657WRKY domain
PfamPF031064.8E-15416466IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MEGNIGEPID DGNSQIVGNL ISETKLGTQE SAVKVEERSG NAENGNLFPN NNNNKRGSIA  60
ERRAAKCGFN ASTISITQFR VTMPEMSPPM ARPTFLTIPP GLTPAALLDS PVMLPNSLAP  120
QSPTTGSFHF STINQENTMK TTQIARDHFE FPVESPKVTA LKNCSLETNV QQNMSCIGLT  180
NIHESGNCTR RANQYEQTSN NITPNGSDDG YTWRKYGQKH VKGSEFPRSY YKCTRQNCPV  240
KKKVERSPDG QITEIVYKGA HNHHKSQPPR RATMSSTAYG FGEMSEGNIG GSNSWTSVQF  300
GRNKDVRAPS GLDRTSSASV LTDVSDSLML NYQNTNMNAF ESATPEPSST LASRDDEDED  360
RATEGSTSLG DDVDDYAFDH KRRRREFYSA EMSLSSRAAR EPRVVVQIES DIDILDDGYR  420
WRKYGQKVVK GNPNPSAGCP VRKHVERAPD NLKSVITTYE GKHNHEVPSA NKTTCAISGN  480
RALTSTSKHH KVSNSGMQVQ DCNFQFNRKP FDYVSPSFVD LRIGAASSIY DLKFPTNLHS  540
PLSYASFLLN PNPLQMPEFP LPMSLPCGPI IVPPLAGFHF NDLPLTPNGV SSISGEDQKY  600
THDNYQQQKF EASERQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-25208469878Probable WRKY transcription factor 4
2lex_A6e-25208469878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231201.10.0PREDICTED: WRKY transcription factor WRKY24-like isoform X1
TrEMBLA0A1J6J1A00.0A0A1J6J1A0_NICAT; Putative wrky transcription factor 2
STRINGXP_009794073.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.11e-78WRKY DNA-binding protein 34