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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02482g02011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 468aa MW: 53107.3 Da PI: 7.2033 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 419 | 466 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 +W++ E++ l +v+++G+g+W+ I +t Rt+ ++k++w++ Niben101Scf02482g02011.1 419 KWSALEEDTLRTGVQKYGSGNWTHILNTYRdifiV-RTAGDLKDKWRNM 466 8********************************55.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.729 | 412 | 468 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.4E-13 | 414 | 467 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0044 | 416 | 468 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 418 | 467 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-8 | 419 | 466 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.55E-16 | 419 | 467 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MDIDISRWIL GFILRQPLDD SILNALIHTL PLPNDNLNLK KALILRKLES EISNSSVTEK 60 ILELLELFEE LDHQEGTETL KEMKSAYCAV AVECTVKFLN EKGAESDKGK YFEAVKRIWK 120 KRINLMEKIE NVGFVCEELW DWRDEIEAAL WEDKCCDNVI RRSKGIFPVE AVKVFVREAK 180 ERIGPPFLDV VAETYRSDDA VREIFGGVNE QRTCRNSVRE VRKGNALPRQ KHVAFRRTRG 240 ASAGTCGGVK ISDSIELGLD ASGGQDSFLP MPEIEKAQEA LKLSSKELRD MVKDPLPDAL 300 QFAETLSSLV RDHMGHQPAQ KNSDRAPHPV VASSKLDQTN GENCEAQCNC HPNAASKPDL 360 MNRRSAAHTS ERDDSADELN EESPSGTRRF TLPSPKRTKN SPLKKYEFKN FTTRRKPTKW 420 SALEEDTLRT GVQKYGSGNW THILNTYRDI FIVRTAGDLK DKWRNMMS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772851.1 | 0.0 | PREDICTED: uncharacterized protein LOC104223173 | ||||
Refseq | XP_016477615.1 | 0.0 | PREDICTED: uncharacterized protein LOC107799057 | ||||
TrEMBL | A0A1S4ALX6 | 0.0 | A0A1S4ALX6_TOBAC; uncharacterized protein LOC107799057 | ||||
TrEMBL | A0A1U7W6M4 | 0.0 | A0A1U7W6M4_NICSY; uncharacterized protein LOC104223173 | ||||
STRING | XP_009772851.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3774 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58340.2 | 2e-15 | MYB_related family protein |