PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 287aa MW: 32654 Da PI: 7.4029

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02459g02011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.6	4.1e-52	16	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek...ewyfFskrdkkyatgkrknratksgy 82 +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+e+d++k+ePw+L++++k +++ ewyfFs++d+ky+tg+r+nrat++g+ Niben101Scf02459g02011.1 16 VPPGFRFHPTDEELLHYYLKKKLSFHKFDM-EVIREIDLNKIEPWELQERCKIGSTpqsEWYFFSHKDRKYPTGSRTNRATNAGF 99 69**************************.99**********964444333335********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 Wkatg+dk + + +++g++ktLvfy+grap+g++tdW+mheyrle Niben101Scf02459g02011.1 100 WKATGRDKCIRN-MLKKIGTRKTLVFYRGRAPHGQRTDWIMHEYRLE 145 *******9.8999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-53	15	153	IPR003441	NAC domain
PROSITE profile	PS51005	51.717	16	162	IPR003441	NAC domain
Pfam	PF02365	3.8E-27	17	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MASSGGGGGG GGGGGVPPGF RFHPTDEELL HYYLKKKLSF HKFDMEVIRE IDLNKIEPWE 60 LQERCKIGST PQSEWYFFSH KDRKYPTGSR TNRATNAGFW KATGRDKCIR NMLKKIGTRK 120 TLVFYRGRAP HGQRTDWIMH EYRLEDSDEN SSGVASSNLL NNTSIHQPRT TFTHKESPYL 180 LQHSHDHSLN YSHIPTAVAA TFPQHDEYNS HNNHIQLAQN FMSLGYNHHP HDFSSGESGL 240 EVASSHQNMN NDQWGIINED ANVASSSINQ INNHLPLRGE MDFWNYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-46	16	152	17	151	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-46	16	152	17	151	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-46	16	152	17	151	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-46	16	152	17	151	NO APICAL MERISTEM PROTEIN
3swm_A	2e-46	16	152	20	154	NAC domain-containing protein 19
3swm_B	2e-46	16	152	20	154	NAC domain-containing protein 19
3swm_C	2e-46	16	152	20	154	NAC domain-containing protein 19
3swm_D	2e-46	16	152	20	154	NAC domain-containing protein 19
3swp_A	2e-46	16	152	20	154	NAC domain-containing protein 19
3swp_B	2e-46	16	152	20	154	NAC domain-containing protein 19
3swp_C	2e-46	16	152	20	154	NAC domain-containing protein 19
3swp_D	2e-46	16	152	20	154	NAC domain-containing protein 19
4dul_A	2e-46	16	152	17	151	NAC domain-containing protein 19
4dul_B	2e-46	16	152	17	151	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629334.1	1e-172	PREDICTED: protein BEARSKIN2-like
Swissprot	Q9SV87	4e-96	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A1U7VIZ2	1e-160	A0A1U7VIZ2_NICSY; protein BEARSKIN1-like
STRING	XP_009629334.1	1e-172	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	5e-84	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]