PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02433g06015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 509aa    MW: 55747.6 Da    PI: 8.669
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02433g06015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.2e-084470128
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                              r rW+ eE+ ++++a k++G   W++I 
  Niben101Scf02433g06015.1 44 RERWSDEEHRKFIEALKLHGRA-WRRIE 70
                              78******************88.**995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.16E-63868IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-54472IPR009057Homeodomain-like
CDDcd001670.003224669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MTVQDQSNSD TILPSGSRTS LDVGAPADEY APKIRKPYTI SKQRERWSDE EHRKFIEALK  60
LHGRAWRRIE GKKMSKTNGL FEASFCGHSI LKEVLFNSQS MWAPKLQFRS EVMLRSFSQR  120
FAAPISHSSI YMPFEVVRES NNGDVSSVKP IEIPPPRPKR KPMHPYPRKL AIPVKSGTLA  180
PEKSKRSASP NLCLSETQNQ SPTSVLSALG SDAFGTVDSS KPSESPSAVS SAVSENCGDL  240
VLSEQPDFNL EKRSSSPSQA YASSNPDNQA CVKLELFPED NDFVKEGSVE ASSTHSLKLF  300
GKTVLVTNSC SSPTSGQILL ADVNDEPASR TLSQSYFPMK ISPSDSECAP STVTMYHTPT  360
ANGSPRPNKS VSCHPLSWGS SYVLAAFSCT QVHNPIPMKG RALFDHKDPE DQETQKEGSS  420
TGSNTESVSA ELSVDKSLGV EAQISRNQEA GRELFSVRAS VPSLFVRRAN SAKRVKGFVP  480
YKRCLAERGI SSSTLSGEER EEKRTRLCL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238511.10.0PREDICTED: protein REVEILLE 1-like
TrEMBLA0A1J6KRA70.0A0A1J6KRA7_NICAT; Protein reveille 1
STRINGXP_009782662.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.19e-36MYB_related family protein