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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02429g04002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 436aa MW: 48261.9 Da PI: 4.6899 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 41 | 2.9e-13 | 117 | 210 | 1 | 88 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseela 79 lv+lL+++Aea+s +++ la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l + s+ +a + + ++e+++ ++la Niben101Scf02429g04002.1 117 LVHLLMAAAEALSGANKSreLARVILVRLKELASPNGsSNMERLAAHFTDALQALLDGAASGSLHAKnmfSLNYKDEQQQGDVLA 201 68**********987665559****************889****************99666655554002444455555888899 PP GRAS 80 alklfsevs 88 a++l++++s Niben101Scf02429g04002.1 202 AFQLLQDIS 210 999998875 PP | |||||||
2 | GRAS | 152.1 | 5e-47 | 215 | 430 | 156 | 374 |
GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240 +++etg+rL+ fA+++g pf f+ ++ e++++++L++ +gEa+++n++l+l ++ + ++ ++L+ k+l+P++v+ Niben101Scf02429g04002.1 215 GTVQETGRRLTAFAASIGQPFLFHHCRLESDETFKPSALKLVRGEAIIINCMLHLPHFTYRASDS---VASFLSGSKTLNPRLVT 296 5789*********************99999***************************98554444...459************** PP GRAS 241 vveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 +ve+e+ ++e F+ rf++ l++ysal+dslea++p + +r+ vEr++lg++i + + e++ +W e+l+++G Niben101Scf02429g04002.1 297 LVEEEVRPigEEEGFVGRFMDILHHYSALYDSLEAGFPLQCGARALVERVFLGPRIAGSLFRIYRTWGEDE--RCSWGEWLSAVG 379 *****998767889**********************************************99998844444..478********* PP GRAS 324 Fkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374 +++ ++s + +qaklll ++ dgyrvee + lvlgWk+r+L+s+S W+ Niben101Scf02429g04002.1 380 YRESNISFANHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRLLSASIWT 430 **********************.******9768999***************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 9.9E-11 | 117 | 210 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-44 | 215 | 430 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 16.92 | 217 | 410 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MTVDDTIPDF DYYGGLSTST TTTTTTITTT TSSSDDDHDH GCTWNDWSPV VDWDAFSGGN 60 NFQDLIESMI EGNNCSGGLN MSMPKSTTFY NSEDSVLMEE SEESNNNQSE DVNGLKLVHL 120 LMAAAEALSG ANKSRELARV ILVRLKELAS PNGSSNMERL AAHFTDALQA LLDGAASGSL 180 HAKNMFSLNY KDEQQQGDVL AAFQLLQDIS RRSFGTVQET GRRLTAFAAS IGQPFLFHHC 240 RLESDETFKP SALKLVRGEA IIINCMLHLP HFTYRASDSV ASFLSGSKTL NPRLVTLVEE 300 EVRPIGEEEG FVGRFMDILH HYSALYDSLE AGFPLQCGAR ALVERVFLGP RIAGSLFRIY 360 RTWGEDERCS WGEWLSAVGY RESNISFANH CQAKLLLGLF NDGYRVEEIG TNKLVLGWKS 420 RRLLSASIWT TPDSDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 9e-22 | 213 | 430 | 167 | 378 | Protein SCARECROW |
5b3h_D | 9e-22 | 213 | 430 | 167 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266231.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein | ||||
Swissprot | Q5NE24 | 1e-118 | NSP2_MEDTR; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A314L0K2 | 0.0 | A0A314L0K2_NICAT; Nodulation-signaling pathway 2 protein | ||||
STRING | XP_009799696.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12241 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 3e-80 | GRAS family protein |
Publications ? help Back to Top | |||
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