PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02425g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 296aa    MW: 32651.6 Da    PI: 9.474
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02425g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA42.32.4e-13180216151
                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRp 51 
                               dep+Y+NaKQy++Il+RRq Rakle+++kl  k+rk+              
  Niben101Scf02425g01005.1 180 DEPVYINAKQYHGILRRRQIRAKLEAQNKL-VKARKR-------------V 216
                               79****************************.666664.............4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.9E-18178226IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115218.015179239IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-8181217IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAVRAPALPN RSLEQTSTCF VPHFAVNNSI WWSSNEVQSS HSLLKNLTLE VVPHCQQMKP  60
LGLGLQGDDS YSTQSNSNSP LEVTALGKTG SQDQCASPGS VHGESYKRNK QAQIKTNPFI  120
RYPEYPTDCS QSEMGHSISH APFGYSDPYL SGFYAAYGPH PQMIGIAPAR VPLPLDLAED  180
EPVYINAKQY HGILRRRQIR AKLEAQNKLV KARKRVRGSG GRFLSTKKLQ ESIPNDLNSS  240
QDLVTREAHT SAFLSVRQDA AHNSVIFQQQ QHDHRASSLS SHMAVSLQSS RSTGIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217ARKRVRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793851.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBLA0A1U7XW640.0A0A1U7XW64_NICSY; nuclear transcription factor Y subunit A-4-like isoform X2
STRINGXP_009793846.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-33nuclear factor Y, subunit A6