![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf02420g08014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26672 Da PI: 6.2522 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.1e-12 | 81 | 133 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h e+Er+RR+++ + ++ Lr+ lP ++K s ++ +A +YI +Lq Niben101Scf02420g08014.1 81 KKVMHREIERQRRQEMATLYASLRQQLPLE--IIKGKRSTSDHILEAANYIEHLQ 133 6899*************************7..4*********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-13 | 77 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.19E-10 | 78 | 137 | No hit | No description |
PROSITE profile | PS50888 | 12.944 | 80 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 81 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-9 | 82 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0027 | 86 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MMDNFHSIFP LQQDVDDNDS HQLLYTNPCN FLYQQDLVTD FAPLELDKNT LSFNNNEKGN 60 KVGKASAASL PVEKTSDDKQ KKVMHREIER QRRQEMATLY ASLRQQLPLE IIKGKRSTSD 120 HILEAANYIE HLQKNVRNLE DKREKLNKAS NSSNRDYTKS GSSSTSDSLS STIVTVKQCL 180 DGMEFLVNCG VEREGFRLSR VLEILLQEGL NIVASQAMID VHVIQQKIYD ISFS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804982.1 | 1e-145 | PREDICTED: transcription factor bHLH118-like | ||||
Refseq | XP_009804989.1 | 1e-145 | PREDICTED: transcription factor bHLH118-like | ||||
Refseq | XP_016452590.1 | 1e-145 | PREDICTED: transcription factor bHLH118-like | ||||
TrEMBL | A0A1S3YKF9 | 1e-143 | A0A1S3YKF9_TOBAC; transcription factor bHLH118-like | ||||
TrEMBL | A0A1U7YLP6 | 1e-143 | A0A1U7YLP6_NICSY; transcription factor bHLH118-like | ||||
STRING | XP_009804982.1 | 1e-144 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51780.1 | 2e-29 | bHLH family protein |