PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02417g07006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 355aa MW: 39810.7 Da PI: 5.4445

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02417g07006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47	4.7e-15	171	218	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h Er+RR+r+ ++f L +l+P++ kKl+Ka+iL A++YIk+L+ Niben101Scf02417g07006.1 171 QDHVLSERKRRERLTQCFISLSTLIPNL-----KKLDKASILGDAIKYIKQLE 218 568899********************.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.253	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-13	172	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-18	172	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-18	173	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.67E-15	173	222	No hit	No description
SMART	SM00353	7.9E-17	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDMSLATWWS EMEIMNMDAF HYVENCQTTT SSFDELSFNN NYPFSPCTYG IQAAGILEEK 60 PDFCNSRIGT DHQNTYFASP SSSPPPSSSS PSVISFCNPN SPSTHNYQEN YLNSSVKTEV 120 PSGPTTINFS SQTCPDSDFD DSQHVFQAMG FNAADITQKK STYSRTPLQA QDHVLSERKR 180 RERLTQCFIS LSTLIPNLKK LDKASILGDA IKYIKQLENQ VKSLEEETKK FSEEPVVAVK 240 RTRLLSTYDK SSSSDENSNT IRTNKSVPEI EVRAADGNVL IRICCKKQAT IIKQIFSQVE 300 KFNLTIISSS VMPFGDLSTY ITIVAKMDYA PNMTAEYVAN IRESIMKLIS SHIDV

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDMSLATWWS EMEIMNMDAF HYVENCQTTT SSFDELSFNN NYPFSPCTYG IQAAGILEEK  60
PDFCNSRIGT DHQNTYFASP SSSPPPSSSS PSVISFCNPN SPSTHNYQEN YLNSSVKTEV  120
PSGPTTINFS SQTCPDSDFD DSQHVFQAMG FNAADITQKK STYSRTPLQA QDHVLSERKR  180
RERLTQCFIS LSTLIPNLKK LDKASILGDA IKYIKQLENQ VKSLEEETKK FSEEPVVAVK  240
RTRLLSTYDK SSSSDENSNT IRTNKSVPEI EVRAADGNVL IRICCKKQAT IIKQIFSQVE  300
KFNLTIISSS VMPFGDLSTY ITIVAKMDYA PNMTAEYVAN IRESIMKLIS SHIDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	ERKRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771547.1	0.0	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A1U7VUL2	0.0	A0A1U7VUL2_NICSY; transcription factor bHLH18-like
STRING	XP_009771547.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4508	14	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	7e-43	bHLH family protein