PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf02407g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 349aa MW: 39344.6 Da PI: 8.7921

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02407g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.5	8.7e-19	36	129	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekk....rtsesss 77 +W+++e+ aLi+a+r+++ +l+rg+l++++W+ev++ + r g+ ++++qC++k+e+l+kry+ + +++ r+ + s Niben101Scf02407g02002.1 36 CWSHDETIALIDAYRDKWYSLSRGNLRANHWQEVADDVaaRCPGVdpPKTAVQCRHKMEKLRKRYRTEIQRAAPyggvRSHRYCS 120 8**********************************976555665589***************9988876411113455556 PP trihelix 78 tcpyfdqle 86 +++f++++ Niben101Scf02407g02002.1 121 AWVLFKRMD 129 777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-20	35	131	No hit	No description
PROSITE profile	PS50090	6.144	37	97	IPR017877	Myb-like domain
SMART	SM00595	3.6E-10	44	136	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MATLSSSTQD LSNSQSELPS ANVTVAVSSR RLPPPCWSHD ETIALIDAYR DKWYSLSRGN 60 LRANHWQEVA DDVAARCPGV DPPKTAVQCR HKMEKLRKRY RTEIQRAAPY GGVRSHRYCS 120 AWVLFKRMDA MEKGPNAVSS DEEADEDVED YRQNSVKLIG DLYGNNSVNT INNRSSSSFQ 180 GVVSNGGGGF RIRIPGMPVA ALPMAKPYSR MEDSGVENTS NFGPGKMFRG DEFVKKADMG 240 KRVAGEGVGP VREKKKEDPI GEMVAAIKML GDGFVRMERM KMDMARELEE MRMEMEMKRT 300 QMILESQQRI VEAFAQAQAR FGAYYALETD YSVELYRNWN LVKNFGTMR

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MATLSSSTQD LSNSQSELPS ANVTVAVSSR RLPPPCWSHD ETIALIDAYR DKWYSLSRGN  60
LRANHWQEVA DDVAARCPGV DPPKTAVQCR HKMEKLRKRY RTEIQRAAPY GGVRSHRYCS  120
AWVLFKRMDA MEKGPNAVSS DEEADEDVED YRQNSVKLIG DLYGNNSVNT INNRSSSSFQ  180
GVVSNGGGGF RIRIPGMPVA ALPMAKPYSR MEDSGVENTS NFGPGKMFRG DEFVKKADMG  240
KRVAGEGVGP VREKKKEDPI GEMVAAIKML GDGFVRMERM KMDMARELEE MRMEMEMKRT  300
QMILESQQRI VEAFAQAQAR FGAYYALETD YSVELYRNWN LVKNFGTMR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244646.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A1J6JAE8	0.0	A0A1J6JAE8_NICAT; Trihelix transcription factor asil2
STRING	XP_009775826.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-58	Trihelix family protein