PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf02381g02004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 299aa MW: 32247.3 Da PI: 6.9015

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02381g02004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.5	6.5e-31	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++ Niben101Scf02381g02004.1 4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLLNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLL 88 6********************************************************************************** PP DUF260 81 lklqqqleqlkaelallk 98 +++++ql+q ++e++l + Niben101Scf02381g02004.1 89 WSGNWQLCQNAVEAVLKG 106 **********998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.606	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL LNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGAPVT PIASEVAVNN 120 NGPPLKLPYD IRHINKDDNA IKSNDLHRVR TRCRFKRSAT NTKAAKANPV CSGSGDESAH 180 EKVNGSTSHD SSLSHQSEAA AVAAPNAQCE SREIASLQSA DIVEGEDSTA VEPASVSQVD 240 DRAEDGEIEL ELTLGFASFA TSHGKPKDTK RSEAVHLVDA AGECKMELGL TFRCDQFSF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801662.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	7e-95	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1U7YC06	0.0	A0A1U7YC06_NICSY; LOB domain-containing protein 41-like
STRING	XP_009801662.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-91	LOB domain-containing protein 41