PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf02380g01006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 107aa MW: 11892.8 Da PI: 8.8097

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02380g01006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.2	3.7e-40	8	95	1	88
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +Ca+Ck+lrr+CakdC++apyfp+++p+kf +vhk+FGasn++k+l+++p ++r da+ss+vyeA+ r+rdPvyG++g i+ lq+ + Niben101Scf02380g01006.1 8 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFGIVHKVFGASNISKMLQEVPVNKRADAVSSIVYEANTRMRDPVYGCLGAISYLQKYV 94 7***********************************************************************************988 PP DUF260 88 e 88 e Niben101Scf02380g01006.1 95 E 95 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.151	7	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-39	8	95	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MGATGNSPCA SCKLLRRRCA KDCIFAPYFP SDDPHKFGIV HKVFGASNIS KMLQEVPVNK 60 RADAVSSIVY EANTRMRDPV YGCLGAISYL QKYVEIFLCS FPSTTYQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-39	5	94	8	97	LOB family transfactor Ramosa2.1
5ly0_B	2e-39	5	94	8	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019229583.1	1e-61	PREDICTED: LOB domain-containing protein 12-like isoform X2
Swissprot	Q8LBW3	3e-55	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1S3X5C4	9e-58	A0A1S3X5C4_TOBAC; LOB domain-containing protein 12-like
STRING	XP_009764881.1	1e-57	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-57	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]