PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02367g05031.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 367aa    MW: 40281.1 Da    PI: 4.896
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02367g05031.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57355.41.7e-17177225250
                    DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvs 50 
                               lfqrlwse+Deiv+L+G++d++ k++++p++d++af++f+kks+++++ 
  Niben101Scf02367g05031.1 177 LFQRLWSEDDEIVILKGMVDYRLKKKSDPVADLSAFHDFIKKSLHVDIW 225
                               79*******************************************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.9E-13178236IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MTKKHAEEEE GSGDEMEVSS PGNADSESES ESESEPEPES EKQQPPMKKP PVAAPKKPQP  60
PEDSSSSAEE SGSESESESE SEPGTLKPNP VTVKPLASKP MDDPKKSAPK PRSKPNATAK  120
PTSRPPAKPS AGAGAKRPVA VDDGETKVSK RSKKTPKIEI ETPVKQKTPT EDVKRQLFQR  180
LWSEDDEIVI LKGMVDYRLK KKSDPVADLS AFHDFIKKSL HVDIWGKEKT DNKGEKVEEV  240
DRVVENGTTS KKGQSKSEGH DNVVMENGVV EGEEQSGEVV KREKNIEVAS QNLSLISCER  300
SVAELEKWLE ENSGLISVET GNEMKEKLMS LKLAEFDLCF RRVELITEQG KLVREAMGAS  360
GINILQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508976.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A1S4D6K10.0A0A1S4D6K1_TOBAC; mediator-associated protein 1-like
STRINGXP_009799939.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-12DNA-binding storekeeper protein-related transcriptional regulator