PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02358g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 351aa    MW: 38181.1 Da    PI: 6.4424
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02358g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.91.8e-123964126
                   G2-like  1 kprlrWtpeLHerFveaveqLGGsek 26
                              kprlrWt +LHerFv+av+qLGG+ +
  Niben101Scf02358g01014.1 39 KPRLRWTADLHERFVDAVTQLGGPSN 64
                              79*********************975 PP
2G2-like104.37e-3374128155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  Niben101Scf02358g01014.1  74 KPRLRWTADLHERFVDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 128
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-103663IPR009057Homeodomain-like
PROSITE profilePS5129410.66171131IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-3171128IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2374129IPR006447Myb domain, plants
SuperFamilySSF466896.63E-1674128IPR009057Homeodomain-like
PfamPF002499.6E-876127IPR001005SANT/Myb domain
PfamPF143792.9E-16172217IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MFPRLIQPPG EDEYNMNIGI HHTHNINGDP CLVLTSDPKP RLRWTADLHE RFVDAVTQLG  60
GPSNPCLVLT SDPKPRLRWT ADLHERFVDA VTQLGGPSKA TPKAIMRTMG VKGLTLFHLK  120
SHLQKYRLGK LSQKDLGEAS KDGLTATYSL ESPCSGGTPQ QLPTSDLNEG YEVKEALRAQ  180
MEVQSKLHLQ VEAEKHLQIR QDAEQRYISM LEKACKMLAD QFIGGVATEN DQETCQGLGT  240
RTQVTPLCNP VGLCPSESAD LVGVHGPEEV SPRIHPQFTD CSTESCLTSH ESPAGLPLEG  300
TSTGGKKRGA NGDSTHASVV WGEADMISSG VRLLQVNRFG ITSSNVQNVS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1874130157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1874130157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1874130157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1874130157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802388.10.0PREDICTED: uncharacterized protein LOC104247930 isoform X1
RefseqXP_016438721.10.0PREDICTED: uncharacterized protein LOC107764626 isoform X1
TrEMBLA0A1S3XFE80.0A0A1S3XFE8_TOBAC; uncharacterized protein LOC107764626 isoform X1
TrEMBLA0A1U7YGX30.0A0A1U7YGX3_NICSY; uncharacterized protein LOC104247930 isoform X1
STRINGXP_009802388.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97642027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.18e-69G2-like family protein