PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02299g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 882aa    MW: 97889.8 Da    PI: 6.5098
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02299g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23128224199
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                               f+k+lt sd++++g +++p++ a++   +  ++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F 
  Niben101Scf02299g01001.1 128 FCKTLTASDTSTHGGFSVPRRAADKDfsQ--QPPVQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI 210
                               99*********************999643..444459************************************************ PP

                               E-SSSEE..EEEEE-S CS
                        B3  84 ldgrsefelvvkvfrk 99 
                                 ++++ +l+++++r+
  Niben101Scf02299g01001.1 211 --WNEKNQLFLGIRRA 224
                               ..8889999****997 PP
2Auxin_resp117.41.2e-38249332183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+t+s F+++YnPr+++s+Fvv+++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  Niben101Scf02299g01001.1 249 AAHAAATNSRFTIFYNPRSCPSDFVVPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 332
                               79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-41113252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-36122238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-20127218No hitNo description
PfamPF023627.4E-22128224IPR003340B3 DNA binding domain
SMARTSM010193.8E-22128225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717128225IPR003340B3 DNA binding domain
PfamPF065077.6E-34249332IPR010525Auxin response factor
PfamPF023095.1E-7744838IPR033389AUX/IAA domain
SuperFamilySSF542771.44E-6747828No hitNo description
PROSITE profilePS5174522.372753837IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MRLSSAGSNQ QSPEGENKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVTASTNKE  60
AEAHIPNYPS LAPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKEA SFLPLDLGIP  120
TKQPTNYFCK TLTASDTSTH GGFSVPRRAA DKDFSQQPPV QELIARDLHD NEWKFRHIFR  180
GQPKRHLLTT GWSVFVSAKR LVAGDSIIFI WNEKNQLFLG IRRANRSQTV MPSSVLSSDS  240
MHLGLFAAAA HAAATNSRFT IFYNPRSCPS DFVVPLAKYV KAVYHTRISV GMRFRMLFET  300
EESSVRRYMG TITGIGDLDP VRWPNSHWRS VKVGWDESTA GERQPRVSLW EVEPLTTFTM  360
YPSPFPLRLK RSWPPGFPAL SGMKDDDMVM NPMMWLRDVG DGGTQSINFQ GIGVTPWMQP  420
RIDVPIGGMQ MDIYQAMAAG ALQDLRSVDP SKQALTSLLQ LQQSNGVTNS TSGLLYPQLF  480
QQSQGQTAFL PSMAQGQSQV QPVSQPPIFQ PQMLHQNSSN TIHQQQQQSP QEQRPPLQQQ  540
QVIRVLDSSS QSQQTSLQAF CSTQQESFTD TNVNHSTNSI VNPLHSLSGA VTQEEPSQLV  600
SVHRSSSLLS PTGWPPKRAA VDPVLPSASS QRMSPYIDQR GTPNKNISQN ALSLPTFPGR  660
DCPVGQERNN DPHNNLLFGF NIDSPSLMQS DMRNLRGVGS DCESTNVSFA SSNYLNNVGN  720
DFSQNSVMAL SGCINVPGFT QTSENAGQES PHNTFVKVYK SGSFGRSLDI TKFSSYHELR  780
SDLARMFGLE GLLEDPLRSG WQLVFVDREN DVLLLGDDPW PEFVNSVWCI KILSPHDVQQ  840
MGRQGLELLN SVSMSRSSNN SCDDFANRSE SRNIMSVATL DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1522035351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262257.10.0PREDICTED: auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A314L8P70.0A0A314L8P7_NICAT; Auxin response factor
STRINGXP_009797608.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]