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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02291g04002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 565aa MW: 63418.5 Da PI: 4.8757 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 442.5 | 3e-135 | 197 | 565 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 + L++cA a+++g+ e+a++++++l++++s +g+p++R aay++eALaar+a s+++lykal+++e+ se+l+a+++++ev Niben101Scf02291g04002.1 197 QMLFSCAAAIQDGNIEQASSMINELRQMVSIQGEPLERTAAYMVEALAARVATSGKGLYKALKCKEAL---FSERLSAMQVLFEV 278 79*****************************************************************8...9************* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 +P+++f++++aN aIlea++ e+rvHiiDfdi+qG Q+ +Llq+L p++pp+lR+Tgv++p s+ l+ +g rL+++A+ Niben101Scf02291g04002.1 279 CPYFRFGFMAANGAILEAFKDEKRVHIIDFDINQGSQYYTLLQTLERMPGKPPHLRLTGVDDPVSVqrAIGGLNVIGLRLEELAK 363 ***************************************************************999777789************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 +++pfef++ va++++ +++ +L+++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl+ Niben101Scf02291g04002.1 364 DFKIPFEFQA-VASNTALVTPAMLNCHPGEALIVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTTPFLQ 447 **********.7************************************************************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 r++e +yysa+f+sl+a+l+r+s+er++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s +++ +++ l Niben101Scf02291g04002.1 448 RVAEVYNYYSAVFESLDATLSRDSQERVNVERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFTPSPISRNVYYSIQNL 532 ************************************************************************************* PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++++ y+ +ee g+l +gW+d++L+++SaW+ Niben101Scf02291g04002.1 533 IKQYSER-YKAKEEAGALHFGWEDKSLIVASAWK 565 *****66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.579 | 169 | 546 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-132 | 197 | 565 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MSLVRSVRTI GNGKLYFPND HNDNSGLSTS MFTKNARGIM YATESSSTDS YDPKYLLDSP 60 SPSEELLNTS LSEVSGNQFH QRHSSSFQPS RGYDTCQLSY DCEDIVSQRP DSLQYNDGRV 120 TLKLQELESV LFDDNEVDGD DVFARGKCMD IDEEWFSQIG TVLLHDSPKE STSADSNISS 180 SSIYKEISVT APQTPKQMLF SCAAAIQDGN IEQASSMINE LRQMVSIQGE PLERTAAYMV 240 EALAARVATS GKGLYKALKC KEALFSERLS AMQVLFEVCP YFRFGFMAAN GAILEAFKDE 300 KRVHIIDFDI NQGSQYYTLL QTLERMPGKP PHLRLTGVDD PVSVQRAIGG LNVIGLRLEE 360 LAKDFKIPFE FQAVASNTAL VTPAMLNCHP GEALIVNFAF QLHHMPDESV STVNQRDQLL 420 RMVKSLNPKL VTVVEQDMNT NTTPFLQRVA EVYNYYSAVF ESLDATLSRD SQERVNVERQ 480 CLARDIVNIV ACEGEERIER YEVAGKWRAR MMMAGFTPSP ISRNVYYSIQ NLIKQYSERY 540 KAKEEAGALH FGWEDKSLIV ASAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-61 | 202 | 564 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-61 | 202 | 564 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-61 | 202 | 564 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628410.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_009628411.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_009628412.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_009628414.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501226.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501227.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501228.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501230.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501231.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501232.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_018633977.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_018633978.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_018633979.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A1S4CJ40 | 0.0 | A0A1S4CJ40_TOBAC; scarecrow-like protein 1 | ||||
STRING | XP_009628410.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8967 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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