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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02283g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 181aa MW: 21021.2 Da PI: 7.4189 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.4 | 2.6e-13 | 81 | 161 | 14 | 80 |
T-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 14 grlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 +rl +p +f +e + ++ +s++++++d++g+ ++k++ +++ +r+vl kGW++ v+an+L+ gD+v Niben101Scf02283g00017.1 81 SRLLIPGTFDKELlknlseeeriklvdNDDTDKSFEVKVMDQEGNFHKMKFTRWQSLNRFVLNKGWNNLVEANNLQKGDTV 161 678888888777787777777777777556669***********999999999**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 1.2E-10 | 64 | 151 | IPR005508 | B3 domain-containing protein |
PROSITE profile | PS50863 | 10.489 | 68 | 181 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-14 | 72 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-16 | 74 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.88E-14 | 107 | 176 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MTRIKLFGKE IEVEEEPKTI KLFGARIYPC NVEKQQEQEA ALQENLPPTN MCQAIRLAGG 60 SGLVYIGRKK AEESDIKPDL SRLLIPGTFD KELLKNLSEE ERIKLVDNDD TDKSFEVKVM 120 DQEGNFHKMK FTRWQSLNRF VLNKGWNNLV EANNLQKGDT VDLWHFRIDL KLRFAINIIK 180 N |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774698.1 | 1e-116 | PREDICTED: putative B3 domain-containing protein At3g49610 | ||||
Refseq | XP_016495804.1 | 1e-116 | PREDICTED: putative B3 domain-containing protein At3g49610 | ||||
TrEMBL | A0A1S4C414 | 1e-115 | A0A1S4C414_TOBAC; putative B3 domain-containing protein At3g49610 | ||||
TrEMBL | A0A1U7W7U3 | 1e-115 | A0A1U7W7U3_NICSY; putative B3 domain-containing protein At3g49610 | ||||
STRING | XP_009774698.1 | 1e-116 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11679 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05930.1 | 1e-07 | B3 family protein |