PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf02220g04002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 423aa MW: 49038.7 Da PI: 6.3158

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02220g04002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.1	5.7e-24	98	193	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 +Wt+q+v++Li+a+++++e+ ++ kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e+ Niben101Scf02220g04002.1 98 KWTDQMVRLLITAVSYIGEETAAEYggrrkcsnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEV 182 7************999988864223344567799******************************************66999 PP trihelix 76 sstcpyfdqle 86 +++ +++d l+ Niben101Scf02220g04002.1 183 VEKPALLDVLD 193 99998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-22	96	219	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MTPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT ISSMQQDCNQ NISLADHSKG 60 ERGKSASDED EPSFIEDAAD GLNDLNRGKK VTPWQRVKWT DQMVRLLITA VSYIGEETAA 120 EYGGRRKCSN LHKKGKWKSV SKVMAERGHF VSPQQCEDKF NDLNKRYKRL NEILGRGTSC 180 EVVEKPALLD VLDHVSEKGK EEVRKILSSK HLHYEEMCSY HNGNRLHLPP DLELQHSLHL 240 ALTSRDEHDD NDVRKHLQDD NDEDDHETDV VEDQDEFEEN HSLPREHRLH GMSGGFSKRI 300 KQCQGHEIVT FGNSLTTLDG NRTFSSQPQK ANTDANQMFS ECNNADILQK QWMDHRSFQL 360 EEQKLQIQAR MLELEKERFN WKRFSRKKDI ELEIMRMEND RIKLENECMA LELKRKEMLA 420 ENL

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MTPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT ISSMQQDCNQ NISLADHSKG  60
ERGKSASDED EPSFIEDAAD GLNDLNRGKK VTPWQRVKWT DQMVRLLITA VSYIGEETAA  120
EYGGRRKCSN LHKKGKWKSV SKVMAERGHF VSPQQCEDKF NDLNKRYKRL NEILGRGTSC  180
EVVEKPALLD VLDHVSEKGK EEVRKILSSK HLHYEEMCSY HNGNRLHLPP DLELQHSLHL  240
ALTSRDEHDD NDVRKHLQDD NDEDDHETDV VEDQDEFEEN HSLPREHRLH GMSGGFSKRI  300
KQCQGHEIVT FGNSLTTLDG NRTFSSQPQK ANTDANQMFS ECNNADILQK QWMDHRSFQL  360
EEQKLQIQAR MLELEKERFN WKRFSRKKDI ELEIMRMEND RIKLENECMA LELKRKEMLA  420
ENL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009590352.1	0.0	PREDICTED: uncharacterized protein LOC104087550 isoform X1
TrEMBL	A0A1S3ZB38	0.0	A0A1S3ZB38_TOBAC; uncharacterized protein LOC107784772 isoform X1
STRING	XP_009590352.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-145	sequence-specific DNA binding transcription factors