PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02214g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 401aa    MW: 45452.8 Da    PI: 7.2602
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02214g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.72e-31229283155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k+r+rWt++LH++Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR 
  Niben101Scf02214g00010.1 229 KTRIRWTQDLHDQFVECVNRLGGADKATPKAILKLMESDGLTIFHVKSHLQKYRN 283
                               68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-27228284IPR009057Homeodomain-like
PROSITE profilePS512949.614228286IPR017930Myb domain
SuperFamilySSF466899.68E-17228283IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-24229284IPR006447Myb domain, plants
PfamPF002492.4E-8233282IPR001005SANT/Myb domain
PfamPF143792.2E-21313360IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSIQRIGTQE RVPKNSAYDY TLDFNRIPVQ ALHAQKQSSS YMGFSLPSAT SAEYVCQQQQ  60
QFFPNANSSS NSTIIGRIGS PSSAFFATER YLGLTQYDDQ QDSCSQLSKN YDFQIPSYGF  120
LPDSPAEDFH PKISLPPFIR SQFSSSQPFS PDHQGPYRSP FSSLTEKERI LHLKRKLLGE  180
FNTPFDGNQD FSLPHNLCGS HLEYARQQSG FPSANSSNST CSGGSVCNKT RIRWTQDLHD  240
QFVECVNRLG GADKATPKAI LKLMESDGLT IFHVKSHLQK YRNAKYIPEP TDGNSEKRNC  300
PNDVSQIDSK TGMQIKEALQ MQLEVQRRLH EQLEIQRKLQ LRIEEQGKQL KMIFDQQQRT  360
TRSLLDTQNS SISTPERDPA TMYDDMEVLV ADNICFPSKI S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-23229286259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-23229286259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-23229286158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-23229286158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-23229286158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-23229286158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-23229286259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-23229286259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-23229286259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-23229286259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-23229286259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-23229286259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247775.10.0PREDICTED: myb family transcription factor PHL5-like
TrEMBLA0A1J6J5C80.0A0A1J6J5C8_NICAT; Myb family transcription factor phl5
STRINGXP_009801945.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-73G2-like family protein