PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02210g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 243aa    MW: 27556.5 Da    PI: 9.5822
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02210g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.63.8e-47161441128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+++d++k++PwdLp      e+e yfFs+r+ k+ +g+r+nrat+sgyWka
  Niben101Scf02210g01002.1  16 LPPGFRFHPTDEELVVQYLKRKVFSFPLPA-SIIPDIDVHKSDPWDLPGD---LEQERYFFSTREMKHLKGNRSNRATNSGYWKA 96 
                               79****************************.89***************54...46799*************************** PP

                       NAM  86 tgkdkevlskkgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                               tg dke++s +g++     vg+kktL fykg+  +g +tdW+mheyrl
  Niben101Scf02210g01002.1  97 TGLDKEIVSCRGKQqqqllVGMKKTLLFYKGKPLHGCRTDWIMHEYRL 144
                               ********98444445677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5610166IPR003441NAC domain
PROSITE profilePS5100554.65116166IPR003441NAC domain
PfamPF023653.1E-2617144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGMEKLNFVK IGAVRLPPGF RFHPTDEELV VQYLKRKVFS FPLPASIIPD IDVHKSDPWD  60
LPGDLEQERY FFSTREMKHL KGNRSNRATN SGYWKATGLD KEIVSCRGKQ QQQLLVGMKK  120
TLLFYKGKPL HGCRTDWIMH EYRLANLVPN NIPTQENWVL CRIFLKKRGS SKNEEANTTS  180
CRAGAKSKLV FYDFMNSCVP ASSSVSGSSG ITELSTNESD AHEDSSSCNS FTTLIRRKNL  240
ALD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-4711724171NO APICAL MERISTEM PROTEIN
1ut4_B3e-4711724171NO APICAL MERISTEM PROTEIN
1ut7_A3e-4711724171NO APICAL MERISTEM PROTEIN
1ut7_B3e-4711724171NO APICAL MERISTEM PROTEIN
3swm_A3e-4711727174NAC domain-containing protein 19
3swm_B3e-4711727174NAC domain-containing protein 19
3swm_C3e-4711727174NAC domain-containing protein 19
3swm_D3e-4711727174NAC domain-containing protein 19
3swp_A3e-4711727174NAC domain-containing protein 19
3swp_B3e-4711727174NAC domain-containing protein 19
3swp_C3e-4711727174NAC domain-containing protein 19
3swp_D3e-4711727174NAC domain-containing protein 19
4dul_A3e-4711724171NAC domain-containing protein 19
4dul_B3e-4711724171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804476.11e-161PREDICTED: NAC domain-containing protein 18-like
RefseqXP_016501117.11e-161PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY934e-87NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1S4CIT01e-160A0A1S4CIT0_TOBAC; NAC domain-containing protein 83-like
TrEMBLA0A1U7YR911e-160A0A1U7YR91_NICSY; NAC domain-containing protein 18-like
STRINGXP_009804476.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-87NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]