PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02156g03004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 481aa    MW: 53789.3 Da    PI: 9.3671
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02156g03004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-0871144155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng.............kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  ++  n+              +   ++  +g ++ +e Aa+a++ a++k++g
  Niben101Scf02156g03004.1  71 SIYRGVTRHRWTGRYEAHLWDkSTWnqNQnkkgkqgtaqkrrLNcfvTKLLVGAYDDEEAAARAYDLAALKYWG 144
                               57*******************7777752267999999987551168999***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-771144IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1171153IPR016177DNA-binding domain
PROSITE profilePS5103217.5372152IPR001471AP2/ERF domain
SMARTSM003801.1E-1672158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-1272153IPR001471AP2/ERF domain
PRINTSPR003675.2E-57384IPR001471AP2/ERF domain
PRINTSPR003675.2E-5134154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MASPSSEPTA KPEGSSGNDV GGGETSEAMG SIGTDQLLLY RGLKKAKKER GCTAKERISK  60
MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGTAQK RRLNCFVTKL  120
LVGAYDDEEA AARAYDLAAL KYWGPGTLIN FPVTDYTRDL EEMQNVSRED YLASLRRKSG  180
GFPRGISKYR PLSRCDKTDH VCVYMASRWD LQFGRVPGAD YFNSLQYGDD ATINNEYIGG  240
FCMDRKIDLS SYIKWWGGNK ARQTDSHLKT SEETKVGCPE DIDNELRASE LSIQQTEPYE  300
MPRLGVCQER KNHKSSALSA MSILSQSAAY KSLQEKVAKK KEKAENDENE NKSTINRFDR  360
GKTVEKSSPD SGSERLGAAL NPGGSSICRN LHPLTPLLSA PLLTNYNNVD PLTDSVLWTS  420
LVPIFHTGSS RTAEVGAQER SNFRLYFISA RRLTSASTSE IHTTQHNTKF HVHGFYSLWA  480
L
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783849.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-142AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1U7XA860.0A0A1U7XA86_NICSY; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_009783849.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-119AP2 family protein