PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02137g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 110aa    MW: 12924.9 Da    PI: 10.526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02137g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-14281051799
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                +p +f++++ ++ +e+   +l+ +sg+ W++kl  r   ++ ++ ++G ++F+++++L+e Df++F++ g+ +f  +v++f+k
  Niben101Scf02137g00007.1  28 KIPLEFVKHITKEATEP--TILKGPSGKYWNMKL--REDEEGlFFNAGGLNKFAREQQLEEADFLLFQYGGNITF--HVRIFNK 105
                               69*****8887666666..8899***********..888888677789********************9987777..9**9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.1E-613106IPR003340B3 DNA binding domain
SuperFamilySSF1019361.73E-1626107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-1527107IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-1228105IPR003340B3 DNA binding domain
CDDcd100172.50E-1029104No hitNo description
PROSITE profilePS5086311.44829106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MRSRTRKGHQ NTLTTLHRLM WTLKMAQKIP LEFVKHITKE ATEPTILKGP SGKYWNMKLR  60
EDEEGLFFNA GGLNKFAREQ QLEEADFLLF QYGGNITFHV RIFNKNGVER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613235.13e-48PREDICTED: B3 domain-containing protein Os01g0723500-like
RefseqXP_016501188.13e-48PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A1S4CJ436e-47A0A1S4CJ43_TOBAC; B3 domain-containing protein Os01g0723500-like
STRINGXP_009613235.11e-47(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-11B3 family protein