PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02108g02015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 385aa    MW: 44668.8 Da    PI: 8.3806
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02108g02015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.15.6e-14954550
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               k+++  t+  R++ i KK  ELS+LCd++ + ii s++g+l+ ++
  Niben101Scf02108g02015.1  9 KKTKNPKTYQVRKECIKKKTMELSTLCDIKCCTIITSPQGELQAWP 54
                              6788889**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.713150IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-13879IPR002100Transcription factor, MADS-box
PfamPF003191.8E-9953IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAEENQNKKK TKNPKTYQVR KECIKKKTME LSTLCDIKCC TIITSPQGEL QAWPENLDAV  60
KQLLNMYTKT LSPNKKANKE SSEEEIDILT LVESKLDAVN NRIRYLEKKN AGFVSNNKVL  120
SKNFNTRTSD LKFSQIWFPP SKDFFNTIRL SFILAKTLQQ NLHKLSCPNH SLETTFLPFY  180
PLVSTSCKVF FSLNFLRSFC AFNPMTGEHH FISHHDFETI GDGLAVDYPK SHQYKLVTFN  240
KLVEQEGYKF HVFSSEGSGE WHEVQFRMTF NHLTFDSKPV YVNDSLHWLR TDGRDNVITG  300
HVNGYIDGFP IFRLIRHQYL SEYDSETNGY KRAEVLNKGY MIKDYPCSFE PTLASVHSTF  360
LDTVHHKHRP AITAALDELQ RFITE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-07AGAMOUS-like 103