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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02085g08002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 22295.1 Da PI: 4.9713 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H Niben101Scf02085g08002.1 42 YRCSFCKRGFSNAQALGGHMNIH 64 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.64E-7 | 40 | 68 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 40 | 66 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.468 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0053 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MTSSPYCSKY LFIPSSKPCP FISMEIDPSN SEKSDELHVK FYRCSFCKRG FSNAQALGGH 60 MNIHRKDRAR LREFSSENLL SLDINNSVNP PPLAPANEDS LQHEVSYDET ISSPTKRPCV 120 NTSEENDHYD DHNHEMIIGD FLQLPLLKET PLIKEASNCV DKQVEEKSMQ LNPVSELDLE 180 LRLGMEPPHE SLMKTL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019229488.1 | 1e-119 | PREDICTED: transcriptional regulator TAC1-like | ||||
TrEMBL | A0A314KKV0 | 1e-118 | A0A314KKV0_NICAT; Transcriptional regulator tac1 | ||||
STRING | XP_009596834.1 | 1e-105 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7463 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 2e-15 | C2H2 family protein |