PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf02083g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 806aa MW: 90847.1 Da PI: 7.6613

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02083g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.2	2.5e-09	35	95	21	82
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ + +yf Niben101Scf02083g00003.1 35 QGRGKTRADKDREVADFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ-GSKSYF 95 45788999999**************************************974444.355666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00180	4.38E-14	654	791	No hit	No description
Gene3D	G3DSA:1.10.510.10	3.6E-5	657	756	No hit	No description
SuperFamily	SSF56112	2.38E-15	658	797	IPR011009	Protein kinase-like domain

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence Send to blast
MLWLARAWKI QYQGGSSELH LEGSQEMSTG AGVQQGRGKT RADKDREVAD FLNRHGVNRD 60 AKTAGTKWDN MLGEFRKVYE WERGAEREQG SKSYFRLSPY ERKMNRLPAS FDEEVFEELT 120 QFMGPRMRSP QTRGGVGVGT QANIIVSLSD TVTKSLPPPP PCREDDRPLS ARAKQLAIPI 180 SGTEALLHGT RGGFLGYDTT TATSSDIGGP SSSASSKELR RIGKIRMIWE ESVSLWAEEG 240 EHHRGRVKLQ GTSFLNADEI AFLDDSTVAC TLEAFEDGPM KGFSVDRFLS GVQLKVFGRR 300 KSSSSPAPSG PNERLQLPSS EFPIRSTTPW EFQDPTEYYV GCLRFPPPAL PSLFELSWHL 360 QQPPPEELRF PLRRDVFKDL PQGKELFFTT STELLDCRGI TYDVVSSIMR PNPSPSTATD 420 RDSYIGLWDD SINRIISKFC SIEMVFVRKS NSSFSLAETV QDQWPNVTAF LRNFCLWRGE 480 ETGQLREGQL DPSSSIVEKL LWTYMDLPYV LGYYAVGFVV TFCALSRSQD RIIRTDLYTV 540 DLSTPVERLK ALVPCWRIAG LLPLLADRCF HYMSSNGSNL KHLPYTDFER IDLGNGNYVE 600 MTPNTVVRYF SSKRKWMAVK EIYDFLDHRI PHAEFVFRAS EKDLALAFKP RGCKFKPANC 660 DQLIEALKQI TKALVALHDL SFMHRGLGWD KVMRRSDREN EWFITGFDEA VSSPQLYPYG 720 GAAAAGTASG RHPPEMVRNY HNVKVDVWGI GQLVKSCGLV GVPKLLRELQ NRCLDQNPEQ 780 RPTAADCYRH LLQLQSSMSA AAAGGY

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence Send to blast

MLWLARAWKI QYQGGSSELH LEGSQEMSTG AGVQQGRGKT RADKDREVAD FLNRHGVNRD  60
AKTAGTKWDN MLGEFRKVYE WERGAEREQG SKSYFRLSPY ERKMNRLPAS FDEEVFEELT  120
QFMGPRMRSP QTRGGVGVGT QANIIVSLSD TVTKSLPPPP PCREDDRPLS ARAKQLAIPI  180
SGTEALLHGT RGGFLGYDTT TATSSDIGGP SSSASSKELR RIGKIRMIWE ESVSLWAEEG  240
EHHRGRVKLQ GTSFLNADEI AFLDDSTVAC TLEAFEDGPM KGFSVDRFLS GVQLKVFGRR  300
KSSSSPAPSG PNERLQLPSS EFPIRSTTPW EFQDPTEYYV GCLRFPPPAL PSLFELSWHL  360
QQPPPEELRF PLRRDVFKDL PQGKELFFTT STELLDCRGI TYDVVSSIMR PNPSPSTATD  420
RDSYIGLWDD SINRIISKFC SIEMVFVRKS NSSFSLAETV QDQWPNVTAF LRNFCLWRGE  480
ETGQLREGQL DPSSSIVEKL LWTYMDLPYV LGYYAVGFVV TFCALSRSQD RIIRTDLYTV  540
DLSTPVERLK ALVPCWRIAG LLPLLADRCF HYMSSNGSNL KHLPYTDFER IDLGNGNYVE  600
MTPNTVVRYF SSKRKWMAVK EIYDFLDHRI PHAEFVFRAS EKDLALAFKP RGCKFKPANC  660
DQLIEALKQI TKALVALHDL SFMHRGLGWD KVMRRSDREN EWFITGFDEA VSSPQLYPYG  720
GAAAAGTASG RHPPEMVRNY HNVKVDVWGI GQLVKSCGLV GVPKLLRELQ NRCLDQNPEQ  780
RPTAADCYRH LLQLQSSMSA AAAGGY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775235.1	0.0	PREDICTED: uncharacterized protein LOC104225161
TrEMBL	A0A1U7WLU2	0.0	A0A1U7WLU2_NICSY; uncharacterized protein LOC104225161
STRING	XP_009775235.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12936	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-08	Trihelix family protein