PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02073g09008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 294aa MW: 34189.3 Da PI: 9.6056 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.9 | 7.2e-30 | 75 | 125 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++nrqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fss+g++yeys+ Niben101Scf02073g09008.1 75 KRIDNNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSSRGRVYEYSN 125 79***********************************************95 PP | |||||||
2 | K-box | 99.7 | 4.2e-33 | 145 | 239 | 8 | 100 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 + ++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL+++eL+qLe++Le+++++iRskK e++l+++e+lqk+e +l++e Niben101Scf02073g09008.1 145 ActTQELNAQFYQQESKKLRQQIQMIQNSNRHLVGEGLSSLNVRELKQLENRLERGITRIRSKKREMILAETENLQKREIQLEQE 229 14478899***************************************************************************** PP K-box 91 nkaLrkklee 100 n Lr+k++e Niben101Scf02073g09008.1 230 NAFLRSKIAE 239 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-40 | 67 | 126 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.969 | 67 | 127 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.11E-31 | 68 | 142 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.40E-40 | 68 | 140 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 69 | 123 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-31 | 69 | 89 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-24 | 76 | 123 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-31 | 89 | 104 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-31 | 104 | 125 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.8E-26 | 149 | 237 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.967 | 153 | 243 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MHILCTYVDT GLFLYASFHA YGVSSGAKEW KNTLYILLLY LELIQEKRNI STLIRLIFLT 60 TTSNMEMGRG KIEIKRIDNN TNRQVTFCKR RNGLLKKAYE LSVLCEAEIA LIVFSSRGRV 120 YEYSNNNIKA TIDRYKKATS ETSNACTTQE LNAQFYQQES KKLRQQIQMI QNSNRHLVGE 180 GLSSLNVREL KQLENRLERG ITRIRSKKRE MILAETENLQ KREIQLEQEN AFLRSKIAEN 240 ERLQELSMMP TGGQDYSAIQ QYLARNMLQL NMMEGGVPSY HQLPTEKKSL ELHE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-19 | 67 | 135 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-19 | 67 | 135 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-19 | 67 | 135 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-19 | 67 | 135 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-19 | 67 | 135 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-19 | 67 | 135 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-19 | 67 | 135 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-19 | 67 | 135 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-19 | 67 | 135 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-19 | 67 | 135 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019249034.1 | 1e-171 | PREDICTED: agamous-like MADS-box protein AGL11 isoform X1 | ||||
Swissprot | F6I457 | 1e-111 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A1U7W7P3 | 1e-161 | A0A1U7W7P3_NICSY; agamous-like MADS-box protein AGL11 | ||||
STRING | XP_009770275.1 | 1e-162 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.3 | 2e-98 | MIKC_MADS family protein |