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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02060g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 89aa MW: 10078 Da PI: 11.0711 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.5 | 4.1e-14 | 11 | 59 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHH.HHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeEL.SvLCdaevaviifsstgklye 48 k+i +s r vtfskRr+g+ KKA EL S +++vav++fs+t k y+ Niben101Scf02060g00010.1 11 KKITKESSRMVTFSKRRKGLYKKAVELeSKTRGVQVAVLVFSPTAKPYT 59 678999*********************777789**********998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-14 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.371 | 3 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-18 | 4 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-9 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-18 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-9 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MGTGKKKIEI KKITKESSRM VTFSKRRKGL YKKAVELESK TRGVQVAVLV FSPTAKPYTC 60 GGIDVINHLS KPLGFFSFFR VSNKWYVGF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019237490.1 | 3e-26 | PREDICTED: MADS-box transcription factor 23-like | ||||
TrEMBL | A0A1J6KBP4 | 1e-24 | A0A1J6KBP4_NICAT; Uncharacterized protein | ||||
TrEMBL | A0A2G2W7L6 | 3e-24 | A0A2G2W7L6_CAPBA; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2G3BTX0 | 3e-24 | A0A2G3BTX0_CAPCH; Agamous-like MADS-box protein AGL61 | ||||
STRING | PGSC0003DMT400029433 | 1e-24 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47760.1 | 7e-10 | AGAMOUS-like 102 |