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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Niben101Scf02042g03032.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
C2H2 |
Protein Properties |
Length: 512aa MW: 56405.7 Da PI: 9.2476 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf02042g03032.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
Niben101Scf02042g03032.1 92 FVCEICNKGFQRDQNLQLHRRGH 114
89*******************88 PP
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2 | zf-C2H2 | 15.6 | 4.6e-05 | 168 | 190 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k + +s+ k H++t+
Niben101Scf02042g03032.1 168 WKCDKCSKKYAVQSDWKAHQKTC 190
58*******************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 512 aa
Download sequence Send
to blast |
MSNISGEEGS FSSGNTGDQQ VQKHNQAAYL KTSNNISSSI TTTSNGSTSQ FQQQQNKQQP 60 LAKKRRNLPG TPDPNAEVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL 120 RQRSTTEVRK RVYICPEPTC VHHNPARALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ 180 SDWKAHQKTC GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNKVNQGL RNNNMEPNLQ 240 SGQMHGLMSS NASLGLSDFN NFDPKTSLKS LPQELLPIPF KCMNNNMAAG AMFSTASGNL 300 FGSPRSVASS SSGLQSNFNY LQDSSKNGAG QGQAPMSATA LLQKAAQMGA TASSSINSPM 360 MQKSFVTSAM AGPYVSPSLY ENFQTQPDNN TNNHQPNLAA VMNDMGMYSG ILMSNDHQDI 420 NTEHHQENNN TNDSSSVRNQ STVLGHNGNN DMLTVDFLGV GGSSRPPSLH EQQRLEAAIN 480 QQRMQASAIN PFHQQNISHG NNSAMEKPIW DI
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |