PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02042g03032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 512aa MW: 56405.7 Da PI: 9.2476 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Niben101Scf02042g03032.1 92 FVCEICNKGFQRDQNLQLHRRGH 114 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.6e-05 | 168 | 190 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Niben101Scf02042g03032.1 168 WKCDKCSKKYAVQSDWKAHQKTC 190 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 91 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.32E-8 | 91 | 114 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.2E-5 | 92 | 114 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 77 | 133 | 163 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 156 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.32E-8 | 163 | 189 | No hit | No description |
SMART | SM00355 | 94 | 168 | 188 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MSNISGEEGS FSSGNTGDQQ VQKHNQAAYL KTSNNISSSI TTTSNGSTSQ FQQQQNKQQP 60 LAKKRRNLPG TPDPNAEVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL 120 RQRSTTEVRK RVYICPEPTC VHHNPARALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ 180 SDWKAHQKTC GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNKVNQGL RNNNMEPNLQ 240 SGQMHGLMSS NASLGLSDFN NFDPKTSLKS LPQELLPIPF KCMNNNMAAG AMFSTASGNL 300 FGSPRSVASS SSGLQSNFNY LQDSSKNGAG QGQAPMSATA LLQKAAQMGA TASSSINSPM 360 MQKSFVTSAM AGPYVSPSLY ENFQTQPDNN TNNHQPNLAA VMNDMGMYSG ILMSNDHQDI 420 NTEHHQENNN TNDSSSVRNQ STVLGHNGNN DMLTVDFLGV GGSSRPPSLH EQQRLEAAIN 480 QQRMQASAIN PFHQQNISHG NNSAMEKPIW DI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-34 | 164 | 234 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 2e-34 | 164 | 234 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019239150.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 1e-112 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A1J6JXR1 | 0.0 | A0A1J6JXR1_NICAT; Zinc finger protein jackdaw | ||||
STRING | XP_009620710.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-101 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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