PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02042g03021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 856aa MW: 95300.2 Da PI: 9.7082

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02042g03021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.7	6e-06	66	122	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e+++ g+t +qV+ +F +R++ +k Niben101Scf02042g03021.1 66 KRPRDLLNPKAIKYMQSVFSIKDAINKRETREISALFGVTVTQVRDFFTAQRTRVRK 122 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.151	63	123	IPR001356	Homeobox domain
SMART	SM00389	0.0042	65	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-6	66	128	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.4E-5	66	129	IPR009057	Homeodomain-like
CDD	cd00086	9.37E-4	66	122	No hit	No description
SuperFamily	SSF47676	7.59E-5	225	314	IPR017923	Transcription factor IIS, N-terminal
Gene3D	G3DSA:1.20.930.10	3.9E-4	225	315	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MENQLQLALL SSPTASFMTL FDSQKELLRN QIDQLENIVL RQCNLTGVNP LSQEMAAGAL 60 SIKIGKRPRD LLNPKAIKYM QSVFSIKDAI NKRETREISA LFGVTVTQVR DFFTAQRTRV 120 RKFLRLSREK ASISNASIEG PCPIPLSSES DPSSQTEPVP LDSVAPTCTE EGPSCSTQDD 180 VLTGIEETDK HFLDNILTLM RKEETFSGQV KLMDWILEVQ NPSVLFWFLA KGGVMILATW 240 LSQAAVEEQT SVLTIILKVL CHLPLHKAFP VHMSAILQSV NRLRFYRTPD ISNRARILLA 300 KWSKMFAKSQ AMKKRNGIKS ASDVQDELLL QQSIGEVMGD EIWNSKAEDV GESHANLCGP 360 SENSRKLDSP HPVKLLTASS DDSTKRLNKG ALASKTRERR QVQLMEPPSQ RTTGRSLAVG 420 RPATATQGRP LSVDDIQKAK MRAQFMQSKY GKAKNDESSR VKPEAPNGVT SPQDDILQGA 480 QKLLGCPKDD EHEKLDSVAL KGFKQQETHR KLSFDVEEPP WKRCRRMQIP WCKPPECVCI 540 VKEILLAVKS GSMQGFAKNP FSQRSLMAVP EANGATQLAA LVRSQEKLQA SSSIYPQSAS 600 TTMLAPQQLP IAPQLAQQLS LLQAAAGSFG KDHRLSPLNP SLNKTALANP MHSQLSASEP 660 AVNRNNYSPF GLTEYNLHSA TASAATTRIQ GQTSGNIRSS PMPIANVQER TISLHMPQMA 720 ISHTPPKPQL QSQPQPGYAP EHMWGTMSGS TLNRGYQENS IPNHYNARHV GHVEPGLQQA 780 AWRGNYVEEA GFESWSPDNS PVRRQEQLAR WNHPEPRMNM RENYRSDWPT SRNPSYYSGY 840 HGPDDGGNRR WGDRRR

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MENQLQLALL SSPTASFMTL FDSQKELLRN QIDQLENIVL RQCNLTGVNP LSQEMAAGAL  60
SIKIGKRPRD LLNPKAIKYM QSVFSIKDAI NKRETREISA LFGVTVTQVR DFFTAQRTRV  120
RKFLRLSREK ASISNASIEG PCPIPLSSES DPSSQTEPVP LDSVAPTCTE EGPSCSTQDD  180
VLTGIEETDK HFLDNILTLM RKEETFSGQV KLMDWILEVQ NPSVLFWFLA KGGVMILATW  240
LSQAAVEEQT SVLTIILKVL CHLPLHKAFP VHMSAILQSV NRLRFYRTPD ISNRARILLA  300
KWSKMFAKSQ AMKKRNGIKS ASDVQDELLL QQSIGEVMGD EIWNSKAEDV GESHANLCGP  360
SENSRKLDSP HPVKLLTASS DDSTKRLNKG ALASKTRERR QVQLMEPPSQ RTTGRSLAVG  420
RPATATQGRP LSVDDIQKAK MRAQFMQSKY GKAKNDESSR VKPEAPNGVT SPQDDILQGA  480
QKLLGCPKDD EHEKLDSVAL KGFKQQETHR KLSFDVEEPP WKRCRRMQIP WCKPPECVCI  540
VKEILLAVKS GSMQGFAKNP FSQRSLMAVP EANGATQLAA LVRSQEKLQA SSSIYPQSAS  600
TTMLAPQQLP IAPQLAQQLS LLQAAAGSFG KDHRLSPLNP SLNKTALANP MHSQLSASEP  660
AVNRNNYSPF GLTEYNLHSA TASAATTRIQ GQTSGNIRSS PMPIANVQER TISLHMPQMA  720
ISHTPPKPQL QSQPQPGYAP EHMWGTMSGS TLNRGYQENS IPNHYNARHV GHVEPGLQQA  780
AWRGNYVEEA GFESWSPDNS PVRRQEQLAR WNHPEPRMNM RENYRSDWPT SRNPSYYSGY  840
HGPDDGGNRR WGDRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234289.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-164	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A1J6K9S1	0.0	A0A1J6K9S1_NICAT; Homeobox protein luminidependens
STRING	XP_009780873.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5240	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-167	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]