PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02025g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 156aa MW: 17483.3 Da PI: 10.7701 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.5 | 3.7e-28 | 34 | 110 | 4 | 66 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 kk rhski T+ +RdRR+Rls+++a+++F qd L fdk+skt+eWLl+++k a+ e ++ s Niben101Scf02025g00011.1 34 KKNRHSKINTAHVPRDRRMRLSLDVARKIFNCQDLLAFDKASKTVEWLLTKSKSAVNEVVQGinkencsaatigviS 110 9***********************************************************99666666666555542 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-31 | 34 | 132 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.318 | 34 | 92 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MAANSNKDII LKKLKYKAVA RTKSDNKRVV AGYKKNRHSK INTAHVPRDR RMRLSLDVAR 60 KIFNCQDLLA FDKASKTVEW LLTKSKSAVN EVVQGINKEN CSAATIGVIS TPSTTSECEV 120 VSGIDESTTI NDIQKQPLKL RIKLTITEQM RRIANL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019244778.1 | 4e-66 | PREDICTED: transcription factor DICHOTOMA-like | ||||
TrEMBL | A0A1J6JE48 | 1e-64 | A0A1J6JE48_NICAT; Transcription factor teosinte branched 1 | ||||
STRING | XP_009787900.1 | 4e-62 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 4e-24 | TCP domain protein 12 |