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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01991g05013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 151aa MW: 16759.4 Da PI: 9.3756 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.9 | 1e-30 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p+ r+++++sl+yeA+ r+ +P+yG+vg++ Niben101Scf01991g05013.1 4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPDPLRPAIFRSLLYEACGRIVNPIYGSVGLL 88 6************************************************************************************ PP DUF260 81 lklqqqleqlkaelallk 98 +++++ql+q ++e +l + Niben101Scf01991g05013.1 89 WSGNWQLCQNAVEDVLKG 106 *********999877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.492 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-24 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL MNLINAGPDP 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EDVLKGAPIT PITSEVAVNN 120 NGPPLKLPYD IRHINKDDNA IKSNDLHRFK K |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016495337.1 | 1e-105 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 1e-82 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A1S4C2G1 | 1e-104 | A0A1S4C2G1_TOBAC; LOB domain-containing protein 41-like | ||||
STRING | XP_009801662.1 | 1e-105 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 5e-85 | LOB domain-containing protein 41 |