PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf01983g01021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

STAT

Protein Properties

Length: 756aa MW: 85595.5 Da PI: 5.0181

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01983g01021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	189.7	3.4e-59	137	256	1	120
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfri 85 ldv+l++ +++p++ +vevvasL+yad+ ++vek+ d+eapLL++ydG+e+ s+drp+k++ GrasfklkisqLsskcdnrLf+i Niben101Scf01983g01021.1 137 LDVTLMDNVSRPITEEVEVVASLVYADDEAPVEKPVDDEAPLLTNYDGIEYDSSDRPSKVISGRASFKLKISQLSSKCDNRLFCI 221 89********************************************************************************* PP STAT 86 kfeipklkkypfleavskpirCisrsrntrssslt 120 +feipk+ +ypfle++s+pirCisr+rntr++sl+ Niben101Scf01983g01021.1 222 RFEIPKMGNYPFLEVFSRPIRCISRNRNTRAASLM 256 ****************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.505.10	6.4E-7	642	696	IPR000980	SH2 domain
SuperFamily	SSF55550	6.35E-10	642	700	IPR000980	SH2 domain
PROSITE profile	PS50001	9.811	644	722	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MGIQDYGFLE DLQVEFKDYD GTNGIFLCFW FYLNKASTLP STILLQNHSD VTSHAPFLLL 60 DEKKSLLLYP LLTLWREDVY ATSESELPTK KWVHVGCEDP PVQLSIDSSS TYEIEEDTDG 120 VWSIVGGKAS CRRNFSLDVT LMDNVSRPIT EEVEVVASLV YADDEAPVEK PVDDEAPLLT 180 NYDGIEYDSS DRPSKVISGR ASFKLKISQL SSKCDNRLFC IRFEIPKMGN YPFLEVFSRP 240 IRCISRNRNT RAASLMLRKS SLGVHLLNGS QSPILEDGYS ALPCIVREAK QSPSSKRVKL 300 GQEKLCSNFK DDFVLQQANG ESKSHSWIAE DNYAYPNSLV ARPVSHGRAE NFSSDSENSE 360 TTNSGIDDFP SNRDPISDVD VFKYCLGDLN ERRLLIKEMA MSAKEEELAT FAERVSLFSG 420 CTHHRYIFVL LLHVEDNYAY PNSLVARPVS HGRAENFSSD SENSETTNSG IDDFPSNRDP 480 ISDVDVFKYC LGDLNERRLL IKEMAMSAKE EELATFAERV SLFSGCTHHR HQISISKRLI 540 EEGIKCWNLI SDNNHHVLWE TLVSGLQEHF LKITFGRTRS LIHQNMLMNL SNLQDFDILR 600 RVSGCQDLVS QDNFEKLWCW LYPIAFTLSQ QCITSLWGSA PPVWIEGFIT KDEAESSLRG 660 QDPGTFILRF PTSRSWPHPD SGNLVATYVG SDYTIHHRLV SLDFIYSSGA KGMTIKPIQD 720 MLLEQPELRR LGRQGFDCEK PVGYSKICSF IAISER

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MGIQDYGFLE DLQVEFKDYD GTNGIFLCFW FYLNKASTLP STILLQNHSD VTSHAPFLLL  60
DEKKSLLLYP LLTLWREDVY ATSESELPTK KWVHVGCEDP PVQLSIDSSS TYEIEEDTDG  120
VWSIVGGKAS CRRNFSLDVT LMDNVSRPIT EEVEVVASLV YADDEAPVEK PVDDEAPLLT  180
NYDGIEYDSS DRPSKVISGR ASFKLKISQL SSKCDNRLFC IRFEIPKMGN YPFLEVFSRP  240
IRCISRNRNT RAASLMLRKS SLGVHLLNGS QSPILEDGYS ALPCIVREAK QSPSSKRVKL  300
GQEKLCSNFK DDFVLQQANG ESKSHSWIAE DNYAYPNSLV ARPVSHGRAE NFSSDSENSE  360
TTNSGIDDFP SNRDPISDVD VFKYCLGDLN ERRLLIKEMA MSAKEEELAT FAERVSLFSG  420
CTHHRYIFVL LLHVEDNYAY PNSLVARPVS HGRAENFSSD SENSETTNSG IDDFPSNRDP  480
ISDVDVFKYC LGDLNERRLL IKEMAMSAKE EELATFAERV SLFSGCTHHR HQISISKRLI  540
EEGIKCWNLI SDNNHHVLWE TLVSGLQEHF LKITFGRTRS LIHQNMLMNL SNLQDFDILR  600
RVSGCQDLVS QDNFEKLWCW LYPIAFTLSQ QCITSLWGSA PPVWIEGFIT KDEAESSLRG  660
QDPGTFILRF PTSRSWPHPD SGNLVATYVG SDYTIHHRLV SLDFIYSSGA KGMTIKPIQD  720
MLLEQPELRR LGRQGFDCEK PVGYSKICSF IAISER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769180.1	0.0	PREDICTED: uncharacterized protein LOC104220071
TrEMBL	A0A1U7W4H6	0.0	A0A1U7W4H6_NICSY; uncharacterized protein LOC104220071
STRING	XP_009769180.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9394	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	1e-94	SH2 domain protein B