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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01970g07019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 91aa MW: 10369.7 Da PI: 4.2472 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.2 | 1.4e-10 | 2 | 26 | 26 | 50 |
HHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 26 ELSvLCdaevaviifsstgklyeys 50 ELS+LCd++ + ii s++g+l++++ Niben101Scf01970g07019.1 2 ELSTLCDIKCCTIITSPQGELQTWP 26 9***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.37E-9 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-6 | 2 | 25 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MELSTLCDIK CCTIITSPQG ELQTWPENLD AVKQLLNLYT QTLNPNKTAK QSEEEEEIDI 60 LTLAESKLDA VNNRIRYLEN NNAGFAKQRI E |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776067.1 | 4e-48 | PREDICTED: MADS-box transcription factor 56-like | ||||
Refseq | XP_009799760.1 | 5e-47 | PREDICTED: uncharacterized protein LOC104245789, partial | ||||
Refseq | XP_016469068.1 | 4e-48 | PREDICTED: agamous-like MADS-box protein AGL81 | ||||
TrEMBL | A0A1S3ZXJ4 | 1e-46 | A0A1S3ZXJ4_TOBAC; agamous-like MADS-box protein AGL81 | ||||
TrEMBL | A0A1U7W7S8 | 1e-46 | A0A1U7W7S8_NICSY; MADS-box transcription factor 56-like | ||||
TrEMBL | A0A1U7YLP8 | 1e-45 | A0A1U7YLP8_NICSY; uncharacterized protein LOC104245789 | ||||
STRING | XP_009776067.1 | 2e-47 | (Nicotiana sylvestris) | ||||
STRING | XP_009799760.1 | 2e-46 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3723 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39810.1 | 2e-08 | AGAMOUS-like 98 |