PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01958g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 423aa    MW: 46552.5 Da    PI: 4.7641
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01958g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS187.21.1e-579631218247
                      GRAS  18 elaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                               ++++al+  ++ la ++  ++++++ yf   L +++++     ++a  + e+s +  ++e   + +f+e+sP+lkf+h+taNqaI
  Niben101Scf01958g01006.1  96 NNTDALVIDIKRLAVQQSGAVKKVVYYFEDTLDRTING-----MNAPYVVESS-Y-CTDE-LLQMYFYETSPYLKFAHFTANQAI 172
                               577899999*****************************.....3333344443.2.3333.33457******************* PP

                      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                               lea++ ++rvH+iDf+++qG QWp L+qaLa R + pp +R+Tg+g      ++ + e++  L ++Ae++g++fef+ ++a++l+
  Niben101Scf01958g01006.1 173 LEAFADSNRVHVIDFSLNQGSQWPVLMQALALRHGAPPAFRLTGIGL----PQHYVLEVRYMLVQLAEKIGLEFEFRGFLANSLT 253
                               ***********************************************....779999**************************** PP

                      GRAS 188 dleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv.eqead 247
                               d+++  L++++   Ea+aVn+v++ h+ +++++++e+    +L+++k+++P++v+ +  qea 
  Niben101Scf01958g01006.1 254 DVDTMILSIRSsnVEAVAVNSVFEPHHAMSRPGAIEK----LLNTIKEMQPRIVTTIiKQEAT 312
                               ****9999988779***************99999999....*************876145544 PP
2GRAS76.35.4e-24321416280374
                      GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                               + ++ + +++ gr+i n+v+c+g++r+erhetl++Wr +++++GF++++l++++ +qa++ll+     +g  vee++g l+l   
  Niben101Scf01958g01006.1 321 NRDSEMAEQYPGRQIHNAVTCKGSDRIERHETLSQWRVKMNSVGFNSISLNSNTCNQASTLLNLLRsRHGCGVEENDGFLMLSRD 405
                               5666777778********************************************************999**************** PP

                      GRAS 364 drpLvsvSaWr 374
                               ++pL+s+SaW+
  Niben101Scf01958g01006.1 406 SQPLISTSAWQ 416
                               **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.08153395IPR005202Transcription factor GRAS
PfamPF035143.9E-5596312IPR005202Transcription factor GRAS
PfamPF035141.9E-21321416IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSMDTTTEDG ESFISNTDAI INDTSDISAL AESLISGPNI SNSRLPAIST AGGGGGGADD  60
DMMIVSSGAS SMLSNTNKQS EIMIFNVDFR AFAVCNNTDA LVIDIKRLAV QQSGAVKKVV  120
YYFEDTLDRT INGMNAPYVV ESSYCTDELL QMYFYETSPY LKFAHFTANQ AILEAFADSN  180
RVHVIDFSLN QGSQWPVLMQ ALALRHGAPP AFRLTGIGLP QHYVLEVRYM LVQLAEKIGL  240
EFEFRGFLAN SLTDVDTMIL SIRSSNVEAV AVNSVFEPHH AMSRPGAIEK LLNTIKEMQP  300
RIVTTIIKQE ATNPESTQSY NRDSEMAEQY PGRQIHNAVT CKGSDRIERH ETLSQWRVKM  360
NSVGFNSISL NSNTCNQAST LLNLLRSRHG CGVEENDGFL MLSRDSQPLI STSAWQLTPP  420
SLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-369642136382Protein SCARECROW
5b3h_A1e-369642135381Protein SCARECROW
5b3h_D1e-369642135381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798071.10.0PREDICTED: DELLA protein GAI-like
RefseqXP_016438186.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ7Y1B61e-121GAI_SOLLC; DELLA protein GAI
TrEMBLA0A1S3XDY80.0A0A1S3XDY8_TOBAC; DELLA protein GAI-like
TrEMBLA0A1U7Y8110.0A0A1U7Y811_NICSY; DELLA protein GAI-like
STRINGXP_009798071.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-102GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]