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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01958g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 159aa MW: 18047.2 Da PI: 7.3454 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 175.6 | 3.8e-54 | 15 | 159 | 229 | 374 |
GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313 +lvkslsPk+v++veqe+++n++ F+ rf e+l+yy+a+f+s++a+ pr++++ri+ E+++++r++vn++acega+r+erhe ++ Niben101Scf01958g00001.1 15 RLVKSLSPKIVTLVEQESNTNTAAFVPRFRETLDYYTAMFESIDAGRPRDDKQRISAEEHCMARDVVNIIACEGADRVERHELFG 99 78*********************************************************************************** PP GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 kW++rl++aGF+p pls ++ + ++ +l+ ++s+ yr+ e++g+l+lgWk+r+L ++SaWr Niben101Scf01958g00001.1 100 KWSMRLKMAGFTPCPLSPSVGEAINDMLKDYSSN-YRIAESKGALYLGWKNRALATTSAWR 159 ********************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 26.507 | 1 | 140 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-51 | 15 | 159 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MFESIDAGRP RDDXRLVKSL SPKIVTLVEQ ESNTNTAAFV PRFRETLDYY TAMFESIDAG 60 RPRDDKQRIS AEEHCMARDV VNIIACEGAD RVERHELFGK WSMRLKMAGF TPCPLSPSVG 120 EAINDMLKDY SSNYRIAESK GALYLGWKNR ALATTSAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-24 | 15 | 159 | 227 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009629634.1 | 1e-101 | PREDICTED: scarecrow-like protein 13 | ||||
Refseq | XP_016490832.1 | 1e-101 | PREDICTED: scarecrow-like protein 13 | ||||
Swissprot | Q9LDL7 | 5e-70 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A1S4BPL8 | 1e-100 | A0A1S4BPL8_TOBAC; scarecrow-like protein 13 | ||||
STRING | XP_009629634.1 | 1e-100 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 2e-72 | GRAS family protein |
Publications ? help Back to Top | |||
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