PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01953g01012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 271aa    MW: 31731.5 Da    PI: 4.8933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01953g01012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-1873123656
                               S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +ft+eq++ Le++F+ + ++  +++ ++Ak+lgL+ rqV +WFqN+Ra++k
  Niben101Scf01953g01012.1  73 RFTDEQVKLLESMFRLETKLEPRKKLQMAKELGLQPRQVAIWFQNKRARWK 123
                               7*************************************************9 PP
2HD-ZIP_I/II116.41.7e-3771159391
               HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                                +r+++eqvklLE++F+ e+kLep++K ++a+eLglqprqva+WFqn+RAR+k+kqlE++y +Lk+++d+l+ + ++L++e+e+L
  Niben101Scf01953g01012.1  71 GKRFTDEQVKLLESMFRLETKLEPRKKLQMAKELGLQPRQVAIWFQNKRARWKSKQLEHEYIVLKAKFDHLNMQFQSLKTEKERL 155
                               58*********************************************************************************99 PP

               HD-ZIP_I/II  88 reel 91 
                                 +l
  Niben101Scf01953g01012.1 156 LIQL 159
                               8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.22E-1759127IPR009057Homeodomain-like
PROSITE profilePS5007116.71465125IPR001356Homeobox domain
SMARTSM003891.3E-1567129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1872131IPR009057Homeodomain-like
PfamPF000461.0E-1573123IPR001356Homeobox domain
CDDcd000861.10E-1373126No hitNo description
PRINTSPR000312.9E-596105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000312.9E-5105121IPR000047Helix-turn-helix motif
PfamPF021831.1E-11125166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
ILDQDTYTTS FKHIYSCPAN ITFSIYAVEY IIDKRTPFSD LLNKVMEPEE SQELEKSKSP  60
NSLKKKSTEN GKRFTDEQVK LLESMFRLET KLEPRKKLQM AKELGLQPRQ VAIWFQNKRA  120
RWKSKQLEHE YIVLKAKFDH LNMQFQSLKT EKERLLIQLG ILNDQLENNV ARGSRSEDLK  180
DNEMYTSSEN GGTDLELKDS PGCSNARFDH KRIKEDQDDD TAEEKDKYFT PKEEAEFWNL  240
EELGDNSLEQ WCVGLGSSFN QSCNNSELWD F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232295.11e-155PREDICTED: homeobox-leucine zipper protein ATHB-7-like
TrEMBLA0A1J6KHK41e-154A0A1J6KHK4_NICAT; Homeobox-leucine zipper protein athb-7
STRINGXP_009798092.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-38homeobox 7