PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01938g01003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 310aa MW: 34944.6 Da PI: 8.0925

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01938g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	103.9	8.5e-33	62	167	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k ltpsdv+k++rlv+pk++ae+h + + e+++ l +ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD Niben101Scf01938g01003.1 62 FEKPLTPSDVGKLNRLVIPKQHAEKHfplngtqNDSGEKGFLLNFEDELGKLWTFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGD 146 99*************************999844445899**************************************** PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 fv+F++++ ++ + +++++r+ Niben101Scf01938g01003.1 147 FVLFERHRLDGDRTFIGWRRR 167 ***7544888899999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-40	54	171	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.22E-31	57	165	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.34E-30	60	157	No hit	No description
PROSITE profile	PS50863	14.001	62	168	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.5E-30	62	168	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-26	62	168	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MSINHCPSQF AKPFWCTTKQ HYIMESTRKS SSPNYKKQIT PTSLCPNDNP LEENEIPKEH 60 LFEKPLTPSD VGKLNRLVIP KQHAEKHFPL NGTQNDSGEK GFLLNFEDEL GKLWTFRYSY 120 WNSSQSYVLT KGWSRFVKEK KLDAGDFVLF ERHRLDGDRT FIGWRRRNTA AGAIVLDQEN 180 GVAPPGGGGG GWGQVYYGGS GHPYPSAGVP YQPDCLHAGR RVMHNQTAAN GNNTRRQVRL 240 FGVNLAECEV DESSWSEPST SDGSSTPSHH QQCHEYQGQV GQQYYQYQVH CSNPPAPASS 300 YAKNNHHNNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	8e-48	58	167	4	113	B3 domain-containing transcription factor NGA1
5os9_B	8e-48	58	167	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009588142.1	0.0	PREDICTED: B3 domain-containing protein At2g36080-like
Swissprot	Q8GYJ2	5e-64	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A1U7VI14	0.0	A0A1U7VI14_NICSY; B3 domain-containing protein At2g36080
STRING	XP_009588142.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3801	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	2e-66	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]