PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01926g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 547aa    MW: 60398.2 Da    PI: 5.5534
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01926g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.51.3e-142391956
                              HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Niben101Scf01926g01007.1  2 FKNCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 39
                              9**********************************998 PP
2START88.71.2e-281022472128
                               HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                     START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 
                               la +a++e++++ + +ep+W  s+    + +n++e+++ f+ + +     +++ea++++++v+ ++ +lve+l+d + +W+ ++ 
  Niben101Scf01926g01007.1 102 LAVAAMEEFIQMPQMGEPLWLPSVdrrtSFLNEEEYVRLFPIGIGpkiagFKTEASKDTAAVFLNPINLVEILVDAN-KWSSMFS 185
                               6789********************999999************999********************************.******* PP

                               ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEE CS
                     START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdv 128
                                    a t++v+s+g      galq+++ae+q++ p vp Rd +fvRy++++ +g w++vdv
  Niben101Scf01926g01007.1 186 sivsTAVTVDVLSTGvagnfnGALQVIFAEFQVPFPQVPtRDCYFVRYCKRSVDGIWAVVDV 247
                               999999******************************************************96 PP
3START31.15.4e-11247289164206
                               EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               vtw+ehv+ ++  + +++++l++sgla+gak+w +tl+rqce+
  Niben101Scf01926g01007.1 247 VTWMEHVEADDTAIYNIYKPLLNSGLAFGAKRWISTLDRQCER 289
                               8****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000867.87E-13139No hitNo description
PfamPF000463.8E-12139IPR001356Homeobox domain
SuperFamilySSF466893.25E-11142IPR009057Homeodomain-like
PROSITE profilePS5007114.058141IPR001356Homeobox domain
SMARTSM003897.3E-4145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-13239IPR009057Homeodomain-like
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
SuperFamilySSF559615.91E-1792290No hitNo description
PROSITE profilePS5084820.0792248IPR002913START domain
CDDcd088751.14E-8796288No hitNo description
SMARTSM002341.2E-21101289IPR002913START domain
PfamPF018521.0E-20102247IPR002913START domain
PROSITE profilePS5084810.098249292IPR002913START domain
SuperFamilySSF559611.65E-19311492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
FFKNCPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKV DRISAFAAKY MGEPVSSLNV  60
YSPSVTPPSS LDLGNAFGNK GEVIRSSFNG PTEAEKPFII DLAVAAMEEF IQMPQMGEPL  120
WLPSVDRRTS FLNEEEYVRL FPIGIGPKIA GFKTEASKDT AAVFLNPINL VEILVDANKW  180
SSMFSSIVST AVTVDVLSTG VAGNFNGALQ VIFAEFQVPF PQVPTRDCYF VRYCKRSVDG  240
IWAVVDVTWM EHVEADDTAI YNIYKPLLNS GLAFGAKRWI STLDRQCERL ARAMATNFPD  300
DDMTNMVLGG PEGRRSVLKL AERMVISYCS GVSATSAHQW TTLSGSGSEN DVRIMFRKSI  360
NNPGRPPGIV MCAATSFWLP FSSKTVFDFL RDENTRTEWD ILSNGGVIQR LVHIANGRET  420
GNAVSILRVN SSAISSQNNM LILQESSTDP TGSFVVYAPV DVPAMNTVIN GGNPEYVSLL  480
PSGFAILPDG PPGRIAGGSF SLLHFRFWLI LFLPLSFPLD QLLLSTNSLL AQLIRSGLLF  540
YPIPLDA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802525.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2
RefseqXP_009802527.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X4
RefseqXP_016467380.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A1S3ZSJ60.0A0A1S3ZSJ6_TOBAC; homeobox-leucine zipper protein HDG2-like
TrEMBLA0A1U7YEI60.0A0A1U7YEI6_NICSY; homeobox-leucine zipper protein HDG2-like isoform X4
TrEMBLA0A1U7YUS00.0A0A1U7YUS0_NICSY; homeobox-leucine zipper protein HDG2-like isoform X2
STRINGXP_009802524.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]