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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01848g02010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 144aa MW: 15765.9 Da PI: 7.0925 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.6 | 1.8e-14 | 2 | 39 | 11 | 48 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 vtfskRr+g++KKA EL ++ a+va i+fs+tgk y+ Niben101Scf01848g02010.1 2 VTFSKRRKGLFKKALELESMTCARVAAIVFSPTGKPYT 39 9*********************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.83 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-16 | 1 | 39 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-4 | 2 | 43 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-13 | 2 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-6 | 6 | 21 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-6 | 21 | 42 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MVTFSKRRKG LFKKALELES MTCARVAAIV FSPTGKPYTC GDVSSAVDRH FSSSIDPSSG 60 SADVSNGSSG SRSTLSKNGL CKWLENIDVE ECENLNELLL LKEQLEGTKE KLACMEDSET 120 FLSLTSSGFD PTERSTRDKK LLKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617106.1 | 3e-53 | PREDICTED: MADS-box transcription factor 23-like | ||||
Refseq | XP_016508949.1 | 3e-53 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A1S4D6M9 | 6e-52 | A0A1S4D6M9_TOBAC; agamous-like MADS-box protein AGL29 | ||||
STRING | XP_009617106.1 | 1e-52 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 9e-11 | AGAMOUS-like 29 |