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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01833g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 279aa MW: 31301 Da PI: 7.8796 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.5 | 5.8e-33 | 144 | 202 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+ +C vkk+vers +d+++v++tYeg+H+h+ Niben101Scf01833g00002.1 144 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTVSCGVKKRVERSIKDTSIVVTTYEGTHTHP 202 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.6E-33 | 129 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-28 | 136 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.046 | 139 | 204 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.3E-38 | 144 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-26 | 145 | 202 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MEKENKLKSE TSLENPMFSQ QIQTEKDSLG FLDNMFGAHL LDFNTTIPSI FDLLQTSPPQ 60 SLTNIPSPTS TFQESCEVEV VNSLSISSSS TEAAEDDQQS NTVKQQDEDE DKYKKQLKPK 120 KKNVQKRQRE PRFAFMTKSE IDHLDDGFRW RKYGQKAVKN SPFPRSYYRC TTVSCGVKKR 180 VERSIKDTSI VVTTYEGTHT HPCRITPSRG SIGGVLPRTT AYYGGAIGGG NGGGGTCSNS 240 SLSIPQLQYY QEQQQQMLHS LTTTSPLNNF NNILFIVLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-26 | 137 | 201 | 10 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 8e-26 | 137 | 201 | 10 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019236030.1 | 1e-131 | PREDICTED: probable WRKY transcription factor 23 | ||||
TrEMBL | A0A1J6K2J0 | 1e-130 | A0A1J6K2J0_NICAT; Putative wrky transcription factor 23 | ||||
STRING | XP_009770697.1 | 1e-130 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 3e-44 | WRKY DNA-binding protein 48 |