![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01830g01027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 397aa MW: 45075.9 Da PI: 6.8846 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.3 | 1.1e-51 | 15 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratk 79 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++ + +++wyfFs++dkky+tg+r+nrat+ Niben101Scf01830g01027.1 15 VPPGFRFHPTEEELLHYYLRKKVACEKIDL-DVIRDVDLNKLEPWDIQEkcriG--GstPQNDWYFFSHKDKKYPTGTRTNRATA 96 69****************************.9***************9534332..222556*********************** PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+Wkatg+dk ++s + + +g++ktLvfykgrap+g+k+dW+mheyrl Niben101Scf01830g01027.1 97 AGFWKATGRDKVIHS-NCKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 144 *************99.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-57 | 10 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.308 | 15 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 16 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 397 aa Download sequence Send to blast |
MSKNMNLSVN GQSQVPPGFR FHPTEEELLH YYLRKKVACE KIDLDVIRDV DLNKLEPWDI 60 QEKCRIGGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIH SNCKRIGMRK 120 TLVFYKGRAP HGQKSDWIMH EYRLDDNTNP HEAVNASESS SPEEGWVVCR VFKKKNYHKA 180 LESPHQSSSA VSIMNSRTLI QKPNNDGVLD QILMYMGRSS CKQQDHVNKH NINLVNNINN 240 IHLDDHLMQI NSNSFINSNS NSSGSRFLHL PGLENHHSPT TNMDDDVSSL QLIQQDCSFG 300 HENMLTETEP TSGSGPSDWV ALDRLVASQL NGHVETSNNL YFPLHNNGLQ LRTNRRPNDD 360 DDAFSQSQAA HDDDVEFWSY ARSSSSSPSD PLCHLSV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-49 | 12 | 176 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-49 | 12 | 176 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-49 | 12 | 176 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-49 | 12 | 176 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-48 | 12 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 12 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 12 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 12 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 12 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 12 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 12 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 12 | 176 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-49 | 12 | 176 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-49 | 12 | 176 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774438.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-117 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A1U7W745 | 0.0 | A0A1U7W745_NICSY; NAC domain-containing protein 43-like | ||||
STRING | XP_009774438.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-106 | NAC family protein |