PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01819g02018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 665aa    MW: 74234.4 Da    PI: 7.4536
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01819g02018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07120141426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               ++C ff+r G+C+ Gd+C F+H 
  Niben101Scf01819g02018.1 120 VPCVFFQR-GICSKGDNCAFMHA 141
                               69******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.7932655IPR000571Zinc finger, CCCH-type
PfamPF156632.3E-112781No hitNo description
SMARTSM003560.00232754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2355783IPR000571Zinc finger, CCCH-type
SMARTSM003560.125982IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342116143IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6117142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6118141IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5120141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4121141IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MVGPTPPLPQ LHTQPPAPSS AEDEALKRNT DCVYFLASPL TCKKGSECEY RHSDMARLNP  60
RDCWYWLNGN CLNPKCAFRH PPLDGFLEAQ APTVIGSSVA PVVSVAPMPQ VPYASSKQGV  120
PCVFFQRGIC SKGDNCAFMH APNSISSKPL QPPVSTAFSE IPTAKNAFGG VQNAVQGKKL  180
TQTNHPKPNV LPKPVWKLEN HLTKKENTFD EKVLPPNSVI NRESTRYKPS MPATNGNSLS  240
GPNRVQQPIG LDDHCSMQNK DDEISREPSP GFDVLVDDEL RGSDYYHDED QYGGTRSNRG  300
RNEYDMGDSA DYDSVADIDR DMYRDGHGYD SYDSLQSRYA WEQPIASSER IPGGSAHLER  360
RRYGAVDRPE QVKMSDLRHR LSKHGRGNGL KSVIGHDFSS QKNAEDRANK SSRRDAHYVP  420
SHDSSLSGRL RGRIKLPVRS SSPTDRAELR LNREMDRSRY RGRLSSERPQ LSSYQGRLQD  480
RIKGRVQEDL SNGDRNNRGP RLRRDIINDN NSNFVRPKSL VELKGRKTAE SNEQQHLGKR  540
KFQKLDSGED QSFEGPMSLQ EILKRKRGGG AGIASVGSED YEHERKGQTV MTIGNVVDFP  600
SAIIKNGSGL SIQQEEESKL AADHQSPLCR SANELEAEEE MIMEGSDAQS PDHVSLVEFP  660
LHDEY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254451.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A1J6IR720.0A0A1J6IR72_NICAT; Zinc finger ccch domain-containing protein 17
STRINGXP_009791854.10.0(Nicotiana sylvestris)
STRINGXP_009623001.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633