PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01795g17007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 656aa    MW: 72924.1 Da    PI: 4.4574
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01795g17007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.41.2e-4841311128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lppGfrFhPtd el++++Lk+k+ gk+l++ e+i+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g r nrat++gyW
  Niben101Scf01795g17007.1   4 LPPGFRFHPTDVELIMYHLKRKIMGKQLHF-EAITELNIYKFSPWDLPdKcCYKSKDLEWYFFCPRERKYASGARMNRATETGYW 87 
                               79**************************99.89***************6545666777*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k+tgkd++++  +++ vg  ktLvf++g+ p+g++tdWv+hey++
  Niben101Scf01795g17007.1  88 KTTGKDRSITY-DEKIVGSVKTLVFHQGHPPRGQRTDWVIHEYKF 131
                               ***********.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-572154IPR003441NAC domain
PROSITE profilePS5100554.0934154IPR003441NAC domain
PfamPF023657.3E-245130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MARLPPGFRF HPTDVELIMY HLKRKIMGKQ LHFEAITELN IYKFSPWDLP DKCCYKSKDL  60
EWYFFCPRER KYASGARMNR ATETGYWKTT GKDRSITYDE KIVGSVKTLV FHQGHPPRGQ  120
RTDWVIHEYK FEDKGLADAG FAQDSYVLCK VFQKSGPGPK NGAQYGAPFN EADWEDDEVP  180
AEPCTSDVLC APPQRPNNKN YSIETSMINP GSTSGWPSSQ PSLSLSSIQR MPLDEPNIEV  240
PGEPRLSNVS PINWMPSKKL GDEGVTGESS PSNIFSVLSV LPEKQSLLDT SMINSGPGSS  300
NTWLCTNKIP LDEQDDEIIG LLAHFTEDTT LLSAGNENNQ NVENINQDMN APPDPFADGI  360
DIFDGLGNIE SWEGLGQSRS DLSANWRVNY SLNPMILPEV AAYMELNDLE IPLDHSAGTI  420
ETGQLALSNF YGPYKSNIDL QQFCFGNNSL GINQDFCENQ LLMVPESYTQ QGNHSDMVYN  480
YYQNNASQGY NAATNFNVSC YKQPEESNNR LAAQSMERGV QQRKFYLSIF ALCGGSLILV  540
KAEVILGIDG CTNDALSVIL GDLFYSSIFA LCGGSFIFVK AEVTLEIDGC TDEALSVVLG  600
GLSCVFTCQS NVVNFNSLIK SVVERHSSTK FQPLKLSVFL SVYICVLDIL LVLYLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-45415415168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459506.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_016459507.10.0PREDICTED: NAC domain-containing protein 82-like
TrEMBLA0A1S3Z5M10.0A0A1S3Z5M1_TOBAC; NAC domain-containing protein 82-like
STRINGXP_009762029.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-81NAC domain containing protein 103