PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01759g07006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 696aa    MW: 77000.1 Da    PI: 7.914
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01759g07006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.3e-24113214199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv +++L +gD
  Niben101Scf01759g07006.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVTQKKLVAGD 195
                               89****************************997556555..8******************************************* PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               ++vF   + +++el+v+++r+
  Niben101Scf01759g07006.1 196 SIVFL--RAENGELCVGIRRA 214
                               *****..449999******97 PP
2Auxin_resp111.96.1e-37273356183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa  a+++++Fe vY+Prast+eF+v++++v +a++++++ GmRfkmafetedss++++ +Gt+++++ +dp++WpnS+Wr+L+
  Niben101Scf01759g07006.1 273 AAYLAASGQPFEAVYYPRASTPEFCVRASSVDTAMRIHWCSGMRFKMAFETEDSSRISWfMGTISSIQVADPIHWPNSPWRLLQ 356
                               577899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-37106220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29108216IPR015300DNA-binding pseudobarrel domain
CDDcd100175.25E-23112213No hitNo description
PfamPF023622.6E-22113214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.451113215IPR003340B3 DNA binding domain
SMARTSM010192.2E-23113215IPR003340B3 DNA binding domain
PfamPF065076.6E-32273356IPR010525Auxin response factor
PROSITE profilePS5174514.914585665IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MKEVMEKCVD SQLWHACAGG MVQIPPVYSK VYYFPQGHAE HTLVNVDFST LPRTPALIPC  60
RVAAVKFLAD PETDEVYARI RLVPVGNKGN DFDDDNILGC SKETGTNDKP TSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG ETWKFRHIYR GTPRRHLLTT  180
GWSNFVTQKK LVAGDSIVFL RAENGELCVG IRRAKRGGIG GPETPSGWNC ASGNYSGFSA  240
FLREETNKNG SLNSSGGSLR GKGRVRPESV IEAAYLAASG QPFEAVYYPR ASTPEFCVRA  300
SSVDTAMRIH WCSGMRFKMA FETEDSSRIS WFMGTISSIQ VADPIHWPNS PWRLLQVTWD  360
EPDLLQNVKH VSPWLVELVS NMPVIHLSPF SPPRKKLRLP PDFLLDGQFP LPSFSGNPLR  420
SSSPFCCLSD NITAGIQRAR HAQFGVPLLD LHLSNKVQSG LLPRSFQRAA ADSKLTNCIN  480
KSQNDRNDNI SCLLTMSTSS QISEKTDSVN TPRFLLFGQP ILTEQQISNR CSANAQEVQT  540
GRDLGRTELR NERFDFEQKG RQDSVSSATY LWNRGHHAAG LGADIGQCKV FLESEDVGLS  600
LDLSVLGSYE ELYRRLGNLF GLERSDMLTC VVYHDATGAV KHTGDEPFSD FIKTAKRLTI  660
LMNPSSNIER KWITGLATAE RGLDSSNRAG PLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-79937751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234295.10.0PREDICTED: auxin response factor 18-like
RefseqXP_019234296.10.0PREDICTED: auxin response factor 18-like
RefseqXP_019234297.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1J6KPQ10.0A0A1J6KPQ1_NICAT; Auxin response factor
STRINGXP_009797612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]