PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01745g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 727aa    MW: 82155.5 Da    PI: 5.8664
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01745g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.61.1e-11034369015365
                      GRAS  15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                               +d + a+++L+++++++s+ gd mqRla+y+ ++L+ar+a+s++++y al + +ts    +++l+a++lf  ++P+ k+s++  N
  Niben101Scf01745g02005.1 343 NDRRTANEFLKQIRQNSSSMGDGMQRLAHYVSNGLEARMAGSGTQIYTALISMPTS---AADVLKAYQLFLAACPFRKLSNFFSN 424
                               78899*********************************************999998...9************************* PP

                      GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                               ++I++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g   + ++eetg+rLa++A++++vpfef++ +
  Niben101Scf01745g02005.1 425 KTIMNVAERAKTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPNPGfrPAVRVEETGKRLANYANSFNVPFEFKA-I 508
                               *****************************************************999***************************.7 PP

                      GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                               ak++e++e+e+L++++gE+l+Vn+ ++  +llde+v ++s+rd vL+l+++l+P+v++    +  +n++ F +rf eal +ys++
  Niben101Scf01745g02005.1 509 AKKWETIEVEDLEIREGEVLVVNCLYRFRNLLDETVVVNSPRDIVLNLIRTLKPDVFIQGIVNGAYNAPFFITRFREALFHYSSV 593
                               ************************************************************************************* PP

                      GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                               fd+lea++pre +er+ +E+ ++gre++nvvace aer+er et+++W+ r  +aGF+++pl+e+++  ak  ++ +++d + ++
  Niben101Scf01745g02005.1 594 FDMLEANIPREIHERMLLEKIIFGREVMNVVACEAAERIERPETYKQWKVRNIRAGFRQLPLNEEIMRIAKERVKAYHKD-FVID 677
                               ******************************************************************************77.**** PP

                      GRAS 353 eesgslvlgWkdr 365
                                + ++l++gWk+r
  Niben101Scf01745g02005.1 678 VDGHWLLQGWKGR 690
                               ***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.442303680IPR005202Transcription factor GRAS
PfamPF035143.9E-108343690IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MDKNFKGLYE ATSAIQLKDE ALSFFPDLNL INNLRVSDHT LVQRNHVNIS QFQPDVLVPS  60
VIDNTHEDYD FSDVVLKYIS QMLMEENIEE KACMFQESAA LQAAERSFYE VIGEKYPPSH  120
NQEMPNLGQI DGRYPVDSSS NNYYSCVSDV SDGLLCPNWN PDIGGDSDSS HAIHFPVDGA  180
VTSTSQSSHS SPSSSGTVTD AHSDSPVSSI QIPDIFSDSE SIMQFKKGVE EAMGKEEDEY  240
GKNAVVKLEN WGKHQSPEGS RGKKNVHHDD VDAMEERSNK QSAVFSESTV RSEMFDRVLL  300
CSGGKNESAL RESWQTVSSK NAPEDGLSKG SNGRNSRGKR QGNDRRTANE FLKQIRQNSS  360
SMGDGMQRLA HYVSNGLEAR MAGSGTQIYT ALISMPTSAA DVLKAYQLFL AACPFRKLSN  420
FFSNKTIMNV AERAKTVHII DFGIMYGFQW PCFIQRLSSR PGGPPKLRIT GIDFPNPGFR  480
PAVRVEETGK RLANYANSFN VPFEFKAIAK KWETIEVEDL EIREGEVLVV NCLYRFRNLL  540
DETVVVNSPR DIVLNLIRTL KPDVFIQGIV NGAYNAPFFI TRFREALFHY SSVFDMLEAN  600
IPREIHERML LEKIIFGREV MNVVACEAAE RIERPETYKQ WKVRNIRAGF RQLPLNEEIM  660
RIAKERVKAY HKDFVIDVDG HWLLQGWKGR ISKFLCRALP LHLNSELVYG ADSFEEQRNL  720
SEFVFEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4634868838368Protein SCARECROW
5b3h_A9e-4734868837367Protein SCARECROW
5b3h_D9e-4734868837367Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241581.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1J6KJ680.0A0A1J6KJ68_NICAT; Scarecrow-like protein 14
STRINGXP_009764081.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]