PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01740g07004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 921aa    MW: 103168 Da    PI: 6.5708
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01740g07004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.89.6e-54131273116
                      CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 
                               +e + rwl++ e++ iL+n+e  +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYa
  Niben101Scf01740g07004.1  13 REgRFRWLRPAEVLFILQNHEDQQLANQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYA 97 
                               56689******************************************************************************** PP

                      CG-1  87 hseenptfqrrcywlLeeelekivlvhyle 116
                               h+e+np+fqrr+yw+L+ ++e+ivlvhy++
  Niben101Scf01740g07004.1  98 HGEKNPNFQRRSYWMLDPAYEHIVLVHYRD 127
                               ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.9138134IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7411129IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4716127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.4E-8361446IPR013783Immunoglobulin-like fold
CDDcd001022.98E-6362446No hitNo description
PfamPF018333.9E-9364445IPR002909IPT domain
SuperFamilySSF812961.82E-18364446IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.1E-14561655IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.239561653IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-15565655IPR020683Ankyrin repeat-containing domain
CDDcd002043.51E-13566653No hitNo description
PfamPF127968.4E-7576654IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.992594626IPR002110Ankyrin repeat
SMARTSM0001564711733IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876712741IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.91E-6749818IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.63770792IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.382771800IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011773791IPR000048IQ motif, EF-hand binding site
SMARTSM000153.4E-4793815IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.919795819IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-5796815IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MAESGYNINN LVREGRFRWL RPAEVLFILQ NHEDQQLANQ PPQKPASGSM FLFNKRVLRY  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNPNFQRRSY WMLDPAYEHI  120
VLVHYRDITE IAAFMSQSSP ISSTFSLSPS LYSTQHPGFT VIGSESYQQY QNESSPGSAE  180
VCSGAGINSN GMNISDITRR TEGVNISPQV EISQALHKLE EQLSLNETEP LYSEVENSDD  240
VENFGHDNSS LVQIQHKSNN LLLQPHSGES SESQHQLLNL DGDIWKEMLD HSRSFLAAES  300
QDKCFEKLDE NQVEDFKYPA CARINTYGSY SDQYTTIFDQ DQIGTSFEDD MRLIIAQKQK  360
FTFHDISPDW GYSSEATKVI IVGSFLCNPS EYTWTCMFGD IEVPVQIIKE GAICCQAPPH  420
LPGKVTLCVT TGNRLSCSEV REFEYRVKFD GHGQNNLAEV GGACKSSEEL LHLVRFVQML  480
LSDSSVQKGD GSGSSNDILE NSKASQDSWS QVIESLLFGT STSMVTVDWL LQELLKDKLQ  540
QWLSSKLHVK NNQMGYSFSR KEQGIIHMVA VLGFEWALQP ILDAGVSVNF RDINGWTALH  600
WAARFGREKM VASLVASGAF AGAVTDPSSQ DPFGKTAASI ASSCGHKGVA GFLSEVALTS  660
HLSSLTLEES ELSKGTADVE AERTISSIST KNVATHEDQL SLKDTLAAVR NAAQAAARIQ  720
SAFRAHSFRK RRQREAARAA TTSGDEYCVL SNDVLGLSAA SKLAFRNMRD YNSAALAIQK  780
KYRGWKCRKD FLAFRHKVVK IQAHVRGYQV RKEYKVCWAV GILEKVVLRW RRRGVGLRGF  840
RLEEESIEES EDEDILKLFR KQKVDAAINE AVSRVLSMVD SPEARQQYHR ILEKYRQAKA  900
ELGVNSDTVS TAHGDIPNSD I
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803068.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1U7YIW70.0A0A1U7YIW7_NICSY; calmodulin-binding transcription activator 4-like isoform X1
STRINGXP_009803068.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]