 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf01727g03004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 282aa MW: 32031.5 Da PI: 5.6563 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf01727g03004.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.2 | 1.2e-17 | 89 | 142 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k
Niben101Scf01727g03004.1 89 KKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 142
4557899*********************************************99 PP
|
| 2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 88 | 179 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85
ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L+++++
Niben101Scf01727g03004.1 88 EKKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKADNDALKTQNK 172
69*********************************************************************************** PP
HD-ZIP_I/II 86 eLreelk 92
+L++el+
Niben101Scf01727g03004.1 173 KLHSELQ 179
****997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MLFSSTGTMA FATPETNSVD FRNHEAANDD PPSSFPSHVF PSSCPPHQEF QGISPLLMRR 60
AMSFDHNQES RVEDDMSDDD GSSQLLGEKK RRLNLEQVKA LERSFEMGNK LEPERKMQLA 120
RALGLKPRQI AIWFQNRRAR CKTKQLEKDY EILKRQCDKL KADNDALKTQ NKKLHSELQL 180
LSLGNQESAG GTPAILFNLN KENEGCNWNN NGSGDENNST IDVNLGTTTR TSSTNSPLNN 240
HDVFPTAYKV DQTVNEEGFC NMFTNVEDQN NFWPLPVQQH FY
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 136 | 144 | RRARCKTKQ |
