PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01711g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 321aa    MW: 37249.9 Da    PI: 9.2642
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01711g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.39.4e-141152344
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                              i+ +  r+ tf kR++g++KK +E  +LC+++ ++ii+++++
  Niben101Scf01711g01003.1 11 ISKEKARNATFKKRKEGLMKKLYEFTTLCNVNGCMIIYGPKQ 52
                              888999*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-14165IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-16159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.273151IPR002100Transcription factor, MADS-box
CDDcd002661.15E-18291No hitNo description
PRINTSPR004041.2E-6323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAKLKMEL ISKEKARNAT FKKRKEGLMK KLYEFTTLCN VNGCMIIYGP KQSNGSNSEP  60
EIWTNNSMKS GNNNNKSIQV EEIQKLIDKY KKESSMQSGS TKTFGLSDYF IDRNKKVEEE  120
LIKLRKMNMQ RKYPCWLEFM NQLSEVKLRE LLNLLDDKVE KVKSRIDLLK GNFSSEGLSQ  180
LTHYNDNVNP LLVQGGMEYG GNFTNNNQEQ GAIYPYCNSI INHQEMMMLM MNENDWHYNG  240
ASSSSSSNGN NNMRCALMKY ETMMSHNMML NNQMPYSPYV APTILQPAPY MMMPTALPQM  300
YHPMKENERD EKLKLSPYLR Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255836.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1J6IR270.0A0A1J6IR27_NICAT; Agamous-like mads-box protein agl80
STRINGXP_009774508.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-20M-type_MADS family protein