PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01700g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 26483.1 Da PI: 7.9122 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+ksF + L H +H Niben101Scf01700g00004.1 105 YNCSVCNKSFASYQALGGHKASH 127 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.0005 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H r+H Niben101Scf01700g00004.1 156 HECSICHKYFPTGQALGGHKRRH 178 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.74E-7 | 104 | 178 | No hit | No description |
PROSITE profile | PS50157 | 10.762 | 105 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.021 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.4E-13 | 105 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 156 | 178 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.5E-11 | 156 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.556 | 156 | 183 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MALESLNSPT KEPTPTTSPI YEQVNLDSST KGKRSKRPRS EIQPTEEEFL ALCLIMLARS 60 GGGRTNSTHH DTTIAAAAVQ QQKKQITNGS LSRQDQEALI EQHSYNCSVC NKSFASYQAL 120 GGHKASHRNK HSINTATTVS DDNSTSTSLN PSGRSHECSI CHKYFPTGQA LGGHKRRHYE 180 GKIIGGGAGS REAGGSLTVI SSEAGGSHTV ISSEAGGSHT VISSDFGGSA RTVRDFDLNL 240 PPPPEFSCD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784655.1 | 1e-136 | PREDICTED: zinc finger protein ZAT10-like isoform X1 | ||||
TrEMBL | A0A1U7XDX6 | 1e-134 | A0A1U7XDX6_NICSY; zinc finger protein ZAT10-like isoform X1 | ||||
STRING | XP_009784655.1 | 1e-135 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA735 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-33 | salt tolerance zinc finger |