PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01696g06033.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 490aa    MW: 53383.4 Da    PI: 6.9621
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01696g06033.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.25.8e-16285341359
                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                               + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k+l  +++++ + 
  Niben101Scf01696g06033.1 285 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 341
                               689*****************************************9999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-12282339No hitNo description
SMARTSM003381.7E-19283347IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.679285340IPR004827Basic-leucine zipper domain
PfamPF001701.5E-13286339IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-11287337No hitNo description
CDDcd147022.60E-6288339No hitNo description
PROSITE patternPS000360290305IPR004827Basic-leucine zipper domain
PfamPF124981.1E-46354479IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MYIIKTQSCL FFLLNFLPII KKSLSCFFPE RERYKERERN MDRVFSVEDD IGDHFWSTPP  60
TADLGVDSPT AATAASYSKM MNRSSSEWAF QRFLQEATAA GTSTSSHPQP PTMTASSSSS  120
SHQNDVVEIK DENLSTPNLN PSTALNSKPA SSFGLTAPPN IAVDSEEYQA FLKSQLHLAC  180
AAVALTRGKS LNPQDSGSTA HDKGSETASA AQSGSHVSTL GSGQEVAKIQ DKDAGGPVGI  240
PSLPPVQKKP VVQVRSTTSG SSREQSDDDE AEGEAETTQG MDPADAKRVR RMLSNRESAR  300
RSRRRKQAHL TELETQVSQL RVENSSLLKR LTDISQKYNE AAVDNRVLKA DVETLRAKVK  360
MAEETVKRVT GLNPLFQAMS EISSMVMPSY SGSPSDTSAD AAVPVQDDPK HHYYQQPPNN  420
HMPTHDPRIQ NGIIDVPPIE NVQQNPATTA VGGNRMGRTA SMQRVASLEH LQKRIRGEVS  480
SCGTQGRGEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299306RRSRRRKQ
2301306SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787496.10.0PREDICTED: light-inducible protein CPRF2-like
RefseqXP_016450151.10.0PREDICTED: light-inducible protein CPRF2-like
SwissprotQ990901e-148CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A1S3YD350.0A0A1S3YD35_TOBAC; light-inducible protein CPRF2-like
TrEMBLA0A1U7XCW90.0A0A1U7XCW9_NICSY; light-inducible protein CPRF2-like
STRINGXP_009787496.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29342444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-74bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]