PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01687g08001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 776aa MW: 87355.1 Da PI: 6.3876

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01687g08001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.9	1.2e-20	644	740	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 +kvl++sdv+++gr+vlpkk ae+h +++++ ++ + +ed ++r+W++k+++ ++ks++y+l+ ++ +Fv+ ngL+egDf+v Niben101Scf01687g08001.1 644 QKVLKQSDVGNLGRIVLPKKEAESHlpELESRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIV 727 79***********************999999****7778***99777777777777.************** PP EEE-SSSEE..EEE CS B3 82 Fkldgrsefelvvk 95 ++ d ++++++++ Niben101Scf01687g08001.1 728 LYADT-KCGKYLIR 740 544.88887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-27	637	748	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10015	2.16E-34	641	742	No hit	No description
SuperFamily	SSF101936	8.63E-23	642	737	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.701	643	745	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-20	643	745	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.4E-17	644	739	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MKRGLEYHHG KQDLEDGLEN VMVAMDDIQR NHETTEFVPM EEEQVLGSIV GDTEIFLDGD 60 GSHSHHHHHH HHLDVNDTSI FSTDFLPLPD FPCMSSSSST SSAPTALSKP FPTSSSSSSA 120 SSSNSASWAL LKSDAEKDVQ KNSQPPALSS TTSMELSLPP PEDDVDCLNV MEDLGYMDLI 180 DGNEFWDPCT LFRSDNQNPQ DYNMSDQPFQ LSQDHQQNQE SKPQQLEEEG DDDQNDGLSF 240 FTGNTELAVI FFEWLKQNKD YISAEDMRSI KLKRSTIESA SKRLGGTKEG KKQLLRLILE 300 WVEQCQLQKK AASDSPCQYQ ESQLHDSNPN PNSKDMRSIK LKRSTIESAS KRLGGTKEGK 360 KQLLRLILEW VEQYQLQKKA ASDSPCQYQE SQLHDSNPNP NSSFQYNNAV ASDPNACFFP 420 SPWIPTPSPY IPGPDSYYPT PMAPGYTGDP YSNVPSFTNV EYQAMESAQS WPPSQFSAMA 480 ASQYNPFPEN ESNLATQANP QGLFSQYPYQ LYEGNGERLA RLGSSATKEA RKKRMARQRR 540 LPSHHYRHHS HQTQHESQSS DQSLRIVGEN CTMSPANNHG NWVYWPSAAS SPMMMVPPPE 600 APQPHPMTER PGMQPQNHQK HASAGKRSQS QNWKTEKNLK FLLQKVLKQS DVGNLGRIVL 660 PKKEAESHLP ELESRDGISI AMEDIGTSRV WNMKYRFWPN NKSRMYLLEN TGDFVRTNGL 720 QEGDFIVLYA DTKCGKYLIR GVKVRQTGPK AEGKKPAKKN VRNSSSAVAL MKQLVK

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MKRGLEYHHG KQDLEDGLEN VMVAMDDIQR NHETTEFVPM EEEQVLGSIV GDTEIFLDGD  60
GSHSHHHHHH HHLDVNDTSI FSTDFLPLPD FPCMSSSSST SSAPTALSKP FPTSSSSSSA  120
SSSNSASWAL LKSDAEKDVQ KNSQPPALSS TTSMELSLPP PEDDVDCLNV MEDLGYMDLI  180
DGNEFWDPCT LFRSDNQNPQ DYNMSDQPFQ LSQDHQQNQE SKPQQLEEEG DDDQNDGLSF  240
FTGNTELAVI FFEWLKQNKD YISAEDMRSI KLKRSTIESA SKRLGGTKEG KKQLLRLILE  300
WVEQCQLQKK AASDSPCQYQ ESQLHDSNPN PNSKDMRSIK LKRSTIESAS KRLGGTKEGK  360
KQLLRLILEW VEQYQLQKKA ASDSPCQYQE SQLHDSNPNP NSSFQYNNAV ASDPNACFFP  420
SPWIPTPSPY IPGPDSYYPT PMAPGYTGDP YSNVPSFTNV EYQAMESAQS WPPSQFSAMA  480
ASQYNPFPEN ESNLATQANP QGLFSQYPYQ LYEGNGERLA RLGSSATKEA RKKRMARQRR  540
LPSHHYRHHS HQTQHESQSS DQSLRIVGEN CTMSPANNHG NWVYWPSAAS SPMMMVPPPE  600
APQPHPMTER PGMQPQNHQK HASAGKRSQS QNWKTEKNLK FLLQKVLKQS DVGNLGRIVL  660
PKKEAESHLP ELESRDGISI AMEDIGTSRV WNMKYRFWPN NKSRMYLLEN TGDFVRTNGL  720
QEGDFIVLYA DTKCGKYLIR GVKVRQTGPK AEGKKPAKKN VRNSSSAVAL MKQLVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9b_A	4e-36	639	743	1	105	B3 domain-containing transcription factor FUS3
6j9b_D	4e-36	639	743	1	105	B3 domain-containing transcription factor FUS3

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019238002.1	0.0	PREDICTED: B3 domain-containing transcription factor ABI3-like
TrEMBL	A0A1J6KAN4	0.0	A0A1J6KAN4_NICAT; B3 domain-containing transcription factor abi3
STRING	XP_009792996.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4270	23	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-112	B3 family protein